Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq423 159 1e-33 seq1078 113 1e-19 seq133 102 2e-16 >seq423 Length=39909 Score = 159 bits (176), Expect = 1e-33 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||||||||| || |||||||| || | Sbjct 21261 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGT 21202 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||||||||| |||||||||||||| || || ||||| | Sbjct 21201 AGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 21142 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || ||||| || || | ||| || | Sbjct 21141 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACG 21082 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| ||||| || | ||||| || || || || || || Sbjct 21081 ACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 21039 Score = 145 bits (160), Expect = 2e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || || || || || || || Sbjct 21485 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 21426 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 21425 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGG 21366 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || || || || || ||| || ||||||||||| | ||| |||| | Sbjct 21365 GGGAATACCCTCCTTGTCTTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 21307 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 21306 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 21255 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||||||||||||||| ||||| || ||||| || | Sbjct 20979 TTTGCATACCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 20920 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 20919 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 20860 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | || || | Sbjct 20859 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCGGAAG 20800 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 20799 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 20745 Score = 120 bits (132), Expect = 9e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || |||||||| ||||| || || || || || || || || || |||||| Sbjct 21694 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 21635 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || ||||| ||||| ||||| ||||||||||| || || || || || ||| Sbjct 21634 TCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 21575 Query 140646 TGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 ||||| || ||| || || || || || | ||| | ||| || ||||| || | || Sbjct 21574 TGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGT 21516 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || || || || || |||||||| Sbjct 21515 CTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 21483 >seq1078 Length=45405 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| | ||||| ||| || || | |||||||| || |||||||| || Sbjct 12137 CGTGGCACACCGAGGGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTGTTC 12193 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 12194 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 12253 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 12254 CCAGGGTTGACAA 12266 Score = 107 bits (118), Expect = 6e-18 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || ||||| Sbjct 12898 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGC 12957 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| ||||| | ||||| || Sbjct 12958 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGCTGGGAGTGAG 13017 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 13018 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 13077 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || ||| | ||||| || || || || ||| | || Sbjct 13078 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 13137 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| || | |||||||| ||| || Sbjct 13138 CTGACCGACAAGCGCTG---TCATTTGAGAAATGTT 13170 >seq133 Length=57550 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || ||||| ||||| || || || || || || Sbjct 39933 CATACCACCGCGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 39992 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 39993 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGG 40052 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 40053 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 40112 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 40113 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 40163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515218639049126