Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq701 224 1e-53 seq413 105 7e-18 seq153 93.3 5e-14 >seq701 Length=4748 Score = 224 bits (248), Expect = 1e-53 Identities = 523/778 (67%), Gaps = 28/778 (4%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 1411 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1470 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 ||||| ||| | | ||| ||| |||| ||| ||||| || | || || || Sbjct 1471 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACGCTC 1527 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || || || ||| || || | || |||||| |||| | |||||||| Sbjct 1528 TTCAATGCCGGCACTCCTCAGCCCCAATTATCATCTTGCTTCTTGGTTGATATGAAGGAC 1587 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || |||||||| || |||||| |||||| ||||||||| | | Sbjct 1588 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1647 Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 |||||||| ||| | | ||| | | | | ||||| | ||| || ||| || | Sbjct 1648 GGTGGTATTGGTCTAAATGTGCACCGTA--TTCGTGCTACTGGCTCATACATCGCCGGTA 1705 Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 | ||||| | ||| |||| || || |||||||| || |||||||||||||| || || Sbjct 1706 CCAACGGTACATCGA--ATGGTATTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 1763 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||| ||| |||||||||| ||||| || | || ||||||||||||||||| || Sbjct 1764 GTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 1823 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||| | || | | || || | || || ||| ||| || ||| | || ||| | || Sbjct 1824 GCACTCTGATGTCTTCGATTTCTTGGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCG 1883 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 |||||| || || || || ||||| || || || |||||| || || || || Sbjct 1884 TGCCCGTGATCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAACGTGTTGAAAA 1943 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACG 53771 | ||| || ||| ||||||||||| ||||||||||| |||||| | | || ||||| Sbjct 1944 GAACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACG 2002 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGA 53825 | |||||||| | | |||| | |||| | || | |||| ||| | Sbjct 2003 GAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------A 2056 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 ||| ||||||| | || | ||| | || || || || |||| ||||| |||| Sbjct 2057 AGACCATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAA 2116 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 2117 ACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 2174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||||||||| ||||| | ||| || ||||||||||| |||||||| |||| || | || Sbjct 3000 TGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATTCACATGAAGGACCC 3059 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | ||||||||| || |||||| || |||||||| || Sbjct 3060 CACGATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGCCTCAAGACCGG 3119 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 3120 CATGTACTACCTTCGTAC 3137 >seq413 Length=40179 Score = 105 bits (116), Expect = 7e-18 Identities = 532/826 (64%), Gaps = 40/826 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||| | || ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 35166 TAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 35225 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AGG 74579 ||||||| ||||| | || ||| | |||||| | || | | || | || Sbjct 35226 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCAAGAGCGACAAGGAGA 35282 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | |||||||||| |||| | | | |||||||| ||| Sbjct 35283 CGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCA 35342 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACA-ATCT 74697 || || || || ||||||| ||||| ||| | | || || || | ||| Sbjct 35343 CAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCC 35402 Query 74698 TGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756 || || ||| | ||||| || | |||||||||| || | || |||||| Sbjct 35403 TG-GATCATCTGCTTACTGGCACGAC-CCTTGAGGTGAGAGTGGAGGAGGCA-GGCAAAG 35459 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || || || || || | || | || || || || | || |||||||| Sbjct 35460 TCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATG 35519 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 || ||||||||||| | ||| ||||| | ||||| |||||||||||||| || || Sbjct 35520 AGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCA 35579 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTC 74933 ||| |||||||| || || || || || || | | || | | ||||| || Sbjct 35580 ACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCA--TC 35637 Query 74934 TGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGG 74990 || ||||| ||||| ||| || | |||||| | || || || || | |||||| Sbjct 35638 GGATGGCCCAGTCAGC-CTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGA 35696 Query 74991 CTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 || ||| || |||| ||||||| | |||| || | || ||||| ||||| | Sbjct 35697 TATG--TTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGG 35754 Query 75049 AATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 | ||||| ||| | | |||| | ||||||| | || ||||| | ||||| | Sbjct 35755 AGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGA 35814 Query 75109 CAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | | || |||| || | ||| ||||| ||||||| || || ||||| ||||| Sbjct 35815 CCTCGCCACTGAATCGCTC--GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAA 35872 Query 75167 AAAAGCCAGTACCATTTTGATA----AAGTGGCGCTCATCGTCAGT---GAGTTTGTCCC 75219 ||||| || | | ||| | ||| ||||||| |||| | | |||| || Sbjct 35873 GAAAGCAAGGA----TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCC 35928 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || | || ||| | | |||||||||||| | |||||||| Sbjct 35929 AGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 35974 >seq153 Length=220429 Score = 93.3 bits (102), Expect = 5e-14 Identities = 267/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || || || | | Sbjct 166288 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCATATACC 166229 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG-TCAGCC-- 151992 ||||| | | | ||||| || || | | | || | || | | ||| || Sbjct 166228 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCA-GGTTTGGCTCATCCAT 166173 Query 151993 -GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 || | ||| ||| || | | ||| || ||| |||||| |||| || | ||||| Sbjct 166172 GGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGGC 166113 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 166112 AGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGAT 166053 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| | || ||||| ||||| |||| | || || || ||| | ||| Sbjct 166052 GTTGTTTGAACCTACGAAGTTCTGGGCCAGGCCAATGATAGTCTGTTGGAGAGACTGTTC 165993 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||||||| | || || || ||||| | | |||||| |||| Sbjct 165992 ACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGTC 165933 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | | ||| |||||| ||||| || || ||||| ||||| Sbjct 165932 TTTGACGATGTTTCTCTTGAAGCAGGCATATATGACCTTACGCTG 165888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203400351600