Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq701 300 2e-76 seq423 185 1e-41 seq133 165 9e-36 seq429 129 7e-25 seq413 127 2e-24 >seq701 Length=4748 Score = 300 bits (332), Expect = 2e-76 Identities = 1147/1767 (65%), Gaps = 69/1767 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| ||||||||| | |||| Sbjct 3143 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 3084 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| |||||||| ||||| |||||| Sbjct 3083 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGAATGTTCAGTGACTGGGACTGA 3024 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | || | | | | || ||||| Sbjct 3023 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 2965 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | || | || |||| || | | | | || Sbjct 2964 GACAGTCTTGTACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 2908 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 2907 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 2848 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 2847 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGGCGTTG 2791 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | || | ||||| ||||| || ||||||||| || | ||||| | || || Sbjct 2790 GTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAGGTACT 2731 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || ||| | ||| || || | |||||| |||||| ||||| Sbjct 2730 GGCAGTAGGCATAGGAGCGAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 2671 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| ||||||||| | Sbjct 2670 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCAAAC 2616 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || || || || ||| ||| || ||| || |||||| ||| Sbjct 2615 TGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 2556 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | ||||| |||||||| ||| |||||||| |||||| Sbjct 2555 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGCTTGTT 2497 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || | || | ||| | ||||| || Sbjct 2496 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCAAG 2437 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 ||||||||| || | | || || ||||||||| |||| | | || | ||||| | | Sbjct 2436 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 2378 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| |||||||||||| |||||||| | | || | Sbjct 2377 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 2318 Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCGGAAGGCT----CA 80905 ||| | |||| |||||| | | ||| | | ||| ||| ||| || Sbjct 2317 TATGCAACTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACA 2258 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962 | || || || ||||| || || ||||| |||| || | ||| ||||| ||||| | Sbjct 2257 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCGATAATTTCAG 2201 Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 |||| | || || ||| || ||||| ||||| || ||||| |||| |||||| Sbjct 2200 TGCAAAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 2143 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 || ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| Sbjct 2142 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 2083 Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 ||||| || | ||||||| |||||| ||||| || | | ||||| |||| Sbjct 2082 CCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 2023 Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | ||||||| | |||| | ||| | | |||| | ||||||||||| ||||||| Sbjct 2022 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 1964 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 |||| |||||| || || || ||| ||||||||| ||||||||||| |||| Sbjct 1963 TCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGG 1904 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 | ||| || || ||| || ||||||| | ||| ||||| || | || | | Sbjct 1903 CAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAAGA 1844 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | || || | ||||| ||||| || || | ||| | | || | |||| Sbjct 1843 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 1785 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||||||||||| ||| || || ||||| ||| || ||||| | |||||| | | Sbjct 1784 --TTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 1727 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491 |||||| || |||||| ||||| |||| || || | || || || ||| Sbjct 1726 TACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCA 1667 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 ||| ||||| || ||||| | | ||| || ||| ||||| || | || || Sbjct 1666 CATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 1609 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || |||||||| || || || | ||||| |||| |||||| || ||| | || || Sbjct 1608 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTG-GG 1550 Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | |||||||||||| || || |||| || || |||| | | | |||| Sbjct 1549 GCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACA 1490 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 |||| | || || ||| ||| || ||||| ||||| ||||| | || |||| Sbjct 1489 TCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACAC 1430 Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756 |||| | ||||| ||| ||||| |||| Sbjct 1429 GCATGATCATGTGCTGAGGGCG-CTCG 1404 >seq423 Length=39909 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || |||||||||||||| |||| ||| | Sbjct 21039 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCGAC 21098 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || || Sbjct 21099 AATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 21158 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| || || | || ||||| || ||||| || | ||||||||| Sbjct 21159 TTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGGAA 21218 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||||||||| ||| | || || || ||||| Sbjct 21219 TCTACTCTTCATCTCGTCCTCCGCCTCCGTGGTGG 21253 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| ||||| || ||||| |||||||| || || |||||| Sbjct 21255 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 21314 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || || || ||||||||||| ||||| || || || Sbjct 21315 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCCCCGGATCAA 21374 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||||| || || || | ||||| || Sbjct 21375 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 21434 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || | || | |||||||| ||||| Sbjct 21435 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 21481 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| || ||||| || || |||||||| || || || Sbjct 21483 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 21542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 21543 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 21602 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 21603 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 21661 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | || |||||||| || || Sbjct 21662 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 21712 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 20742 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 20801 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||| | || ||||||||||||||||| || || || ||| Sbjct 20802 TCCGACACTATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGAC 20861 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || || || | || || Sbjct 20862 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 20921 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| |||||||||||||| || | || || || ||||| Sbjct 20922 AACATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGG 20971 >seq133 Length=57550 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 40163 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 40104 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 40103 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 40044 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 40043 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 39985 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | || || |||||||| Sbjct 39984 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGCGGTGG 39937 >seq429 Length=53405 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | |||| Sbjct 44419 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 44478 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||| ||||| || Sbjct 44479 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAACAGCGACTG 44538 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| || ||||||| || || || | |||||||| |||| ||| Sbjct 44539 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAG 44598 Query 27595 G 27595 | Sbjct 44599 G 44599 >seq413 Length=40179 Score = 127 bits (140), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||||||||| ||||| | || | || || |||| |||||| Sbjct 35659 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 35600 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || ||||| ||| || || || ||||| ||| | ||| ||||| ||| Sbjct 35599 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTC 35540 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 35539 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 35480 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| || ||| || ||||| Sbjct 35479 GACGAGGGTCTTCACACTGACTTTGC 35454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297268603040