Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq133 176 1e-38 seq423 172 1e-37 seq429 129 1e-24 seq701 122 2e-22 >seq133 Length=57550 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || ||||| | ||||| Sbjct 39952 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 40011 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 40012 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 40071 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 40072 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 40131 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 40132 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 40166 >seq423 Length=39909 Score = 172 bits (190), Expect = 1e-37 Identities = 173/222 (78%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||||| || || ||||||||||| ||||| || |||||||| || || | ||||| | Sbjct 21703 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGG-T 21645 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || ||||||||||| || || || ||||| || | || Sbjct 21644 GCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACC 21585 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| |||||||| ||||| |||||| | ||| ||||| || Sbjct 21584 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAG 21525 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || ||||| || || | |||||| Sbjct 21524 GGTGATGGTCTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 21483 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || |||||||| || || ||||| ||||| || || |||||||| | || ||| Sbjct 21238 AGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 21179 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| ||||| || ||||||||||| | || ||||||||| Sbjct 21178 TCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 21119 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| || || |||||||| || ||||| ||| Sbjct 21118 TGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTC 21059 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 21058 TTGCCAGTGAGGGTCTTGAC 21039 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||||||||| || || ||||| ||||| | || || | || || Sbjct 20956 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 20897 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | |||||| ||||| || || | || ||||||||| Sbjct 20896 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 20837 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct 20836 TGAATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 20777 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 20776 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 20745 >seq429 Length=53405 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||||||||| || | || || | ||||| || |||||||| || |||||||| Sbjct 44597 TTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 44538 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || || | || ||||||||||||||||| || || || || Sbjct 44537 AGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 44478 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 44477 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 44419 >seq701 Length=4748 Score = 122 bits (134), Expect = 2e-22 Identities = 198/280 (71%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||||||||| | |||| |||||| ||||| ||||| || |||| Sbjct 2169 GTTCTTTTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 2113 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| | |||||| | |||||||| ||| || || ||||| Sbjct 2112 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATGGTCTTGCG 2053 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || ||||||||||||| ||| || ||||||| ||| ||| ||| || Sbjct 2052 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 1993 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTCA-CT 178327 |||| || || ||| |||||||| | || |||| | ||||| ||| |||| | Sbjct 1992 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTT--TTCAACA 1935 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||||||||||| || |||| | |||| | |||| ||||| Sbjct 1934 CGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAA 1895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159124643288330