Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq373 206 3e-48 seq644 120 4e-22 >seq373 Length=75118 Score = 206 bits (228), Expect = 3e-48 Identities = 625/961 (65%), Gaps = 22/961 (2%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 22342 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 22283 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 ||| || | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 22282 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 22223 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || |||||||| | || || ||| |||||| || | ||| || | ||| | Sbjct 22222 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 22163 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAA 53946 ||||||| || | ||| | ||| | ||| ||||| | |||| Sbjct 22162 CTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 22106 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 || ||||| ||||| | | | | | ||||| || || | |||||||||| Sbjct 22105 AGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAG 22046 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 22045 TGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAG 21986 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 ||| ||||| | || | ||||| || || ||||| ||||| ||||| | Sbjct 21985 AAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATC 21926 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | |||||| ||||| || || | ||| |||| | | | || || || ||||| || Sbjct 21925 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCC 21866 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | || | ||| ||||| || | || | | ||| |||| || |||||| Sbjct 21865 ACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 21806 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGAT 54304 |||| ||| ||||| |||| ||| || ||| | ||||||||| | | ||| | Sbjct 21805 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT--T 21748 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 ||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 21747 AGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATT 21688 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 ||||| ||||| || ||| |||| | || | || || |||| ||| | || Sbjct 21687 CCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTGAGGG 21628 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || || ||||| ||||| || | || ||| | |||||| Sbjct 21627 GTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTG 21568 Query 54485 TACGTCTCGATAGCTGAGTCTATATC------CCATTGATGAATTCCTACTGCGACACGC 54538 || ||||| | || || ||||| |||| || || || | |||||| Sbjct 21567 TATGTCTCCAAGACTCGCTCGATATCATCACCCCAT------ATACCAACAGACACACGC 21514 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | |||||||||||| | || || ||||| || || || || | ||| ||| Sbjct 21513 ATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGC 21454 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 |||||||| || || ||||| || | |||| || || || || || | ||| | ||| Sbjct 21453 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAG 21394 Query 54659 T 54659 | Sbjct 21393 T 21393 >seq644 Length=250981 Score = 120 bits (132), Expect = 4e-22 Identities = 361/552 (65%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 138175 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 138234 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 |||||| || ||||| || ||||| || || | ||| ||||| || || || || || Sbjct 138235 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 138294 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 24324 |||||||||| || | | || | || | | || || ||||| | || | Sbjct 138295 AGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 138353 Query 24325 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 24384 |||| || ||||||||| | || || || ||||| || || || ||||||||| || Sbjct 138354 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 138413 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 | || || | ||||| || || | || || | || |||||||||| Sbjct 138414 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 138473 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | || || || || || |||||||| || | |||||| | ||||| || || || Sbjct 138474 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 138533 Query 24505 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 24564 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 138534 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 138593 Query 24565 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 24621 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 138594 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 138653 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | || | ||| | || || | ||||| ||||| ||||| ||||| || ||||| | || Sbjct 138654 TGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTTCTTGTACATTTGCC 138713 Query 24682 AGATGTCATGAT 24693 | || | ||||| Sbjct 138714 AAATCT-ATGAT 138724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714393704080