Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq373 181 1e-40 seq644 138 1e-27 >seq373 Length=75118 Score = 181 bits (200), Expect = 1e-40 Identities = 633/980 (65%), Gaps = 30/980 (3%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 22342 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 22283 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 22282 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 22223 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 22222 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 22164 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTAT 63180 | || ||||||| || | ||| | |||| | || ||||| | ||| Sbjct 22163 GCTTCTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTAC 22108 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | | |||||||| ||||| | | | | | | ||| || || | ||||||| Sbjct 22107 AGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACA 22050 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 ||| | ||| || |||| | | || || ||||| || |||||||| |||||||| | Sbjct 22049 TCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 21990 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | | ||| ||||| | | | ||||| || || ||||| ||||| |||| Sbjct 21989 CGAGAAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGA 21930 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | | | | |||||| ||||| || || | ||| ||||| | | | || || || |||| Sbjct 21929 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 21870 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || ||||| || | || | ||| ||||| || | || | | ||| |||| || || Sbjct 21869 TGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACAC 21810 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAAT 63538 | || ||| |||| |||||||||| ||| || ||| | ||||||||| | | || Sbjct 21809 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 21750 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 | |||||| || || || ||||| || ||||| | || || || | || || || Sbjct 21749 T--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTA 21692 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||| || || || || || || |||| | || | || || |||| ||| | | Sbjct 21691 GATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTG 21632 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || || || ||||| || | || || ||||| ||||| || | || ||| | || Sbjct 21631 AGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAG 21572 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATC------CCATTGATGAATTCCTACTGCGAC 63772 |||||| ||||| | || || ||||| |||| || || || | || Sbjct 21571 ATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAT------ATACCAACAGACAC 21518 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | |||||||||||| | || ||||| || || || || | | ||| || Sbjct 21517 ACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGA 21458 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | |||||||| || || ||||| || | |||| || || || || || | ||| | Sbjct 21457 TCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGC 21398 Query 63893 CGAATTGAGCTTATCCTTAT 63912 || | | || ||||||| Sbjct 21397 AGAGTCCAACTCCTCCTTAT 21378 >seq644 Length=250981 Score = 138 bits (152), Expect = 1e-27 Identities = 365/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || || ||||| || || Sbjct 138175 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 138234 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 138235 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 138294 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 138295 AGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 138353 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 138354 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 138413 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || | || || ||||| | || || | || |||||||||| Sbjct 138414 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 138473 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 138474 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 138533 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 138534 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 138593 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 138594 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 138653 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| ||||| ||||| ||||| || ||||| | || Sbjct 138654 TGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTTCTTGTACATTTGCC 138713 Query 34129 AGATGTCATGAT 34140 | || | ||||| Sbjct 138714 AAATCT-ATGAT 138724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809955588880