Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq373 206 4e-48 seq644 120 4e-22 >seq373 Length=75118 Score = 206 bits (228), Expect = 4e-48 Identities = 627/962 (65%), Gaps = 24/962 (2%) Strand=Plus/Minus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 22342 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 22283 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 ||| || | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 22282 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 22223 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 22222 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 22164 Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACA 65976 | || ||||||| || | ||| | ||| | ||| ||||| | |||| Sbjct 22163 GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 22107 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 |||||||| ||||| | | | | | ||||| || || | |||||||||| Sbjct 22106 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCA 22047 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 22046 GTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGA 21987 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||| | ||| | || | ||||| || || ||||| ||||| ||||| Sbjct 21986 GAAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAAT 21927 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | | |||| | ||||| || || | ||| ||||| | | | || || || ||||| | Sbjct 21926 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 21867 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | ||||| || | || | ||| ||||| || | || | | ||| |||| || ||||| Sbjct 21866 CACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 21807 Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGA 66334 | |||||||| ||||| |||| ||| || ||| | ||||||||| | | ||| Sbjct 21806 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT-- 21749 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 |||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 21748 TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 21689 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 ||||| ||||| || ||| |||| | || | || || |||| ||| | || Sbjct 21688 TCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTGAGG 21629 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 || || ||||| || | || || ||||| ||||| || | || ||| | ||||| Sbjct 21628 GGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATT 21569 Query 66515 GTACGTCTCAATAGCTGAGTCTATATC------CCATTGATGAATTCCTACTGCGACACG 66568 ||| ||||| | || || ||||| |||| || || || | ||||| Sbjct 21568 GTATGTCTCCAAGACTCGCTCGATATCATCACCCCAT------ATACCAACAGACACACG 21515 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| | |||||||||||| | || || ||||| || || || | | ||| ||| Sbjct 21514 CATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCG 21455 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 |||||||| || || ||||| || | |||| || || || || || | ||| | || Sbjct 21454 CTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGA 21395 Query 66689 GT 66690 || Sbjct 21394 GT 21393 >seq644 Length=250981 Score = 120 bits (132), Expect = 4e-22 Identities = 361/552 (65%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 138175 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 138234 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || ||||| || ||||| || || | ||| ||||| || || || || || Sbjct 138235 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 138294 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 36347 |||||||||| || | || || | || | | || || ||||| | || | Sbjct 138295 AGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 138353 Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407 |||| || ||||||||| | || || || ||||| || || || ||||||||| || Sbjct 138354 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 138413 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 | || || | ||||| || || | || || | || |||||||||| Sbjct 138414 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 138473 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | || || || || || |||||||| || | |||||| | ||||| || || || Sbjct 138474 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 138533 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 138534 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 138593 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || | ||| | | || | | |||| | || ||||| || | || ||| | Sbjct 138594 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 138653 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | || || | ||||| ||||| ||||| ||||| || ||||| | || Sbjct 138654 TGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTTCTTGTACATTTGCC 138713 Query 36705 AGATGTCATGAT 36716 | || | ||||| Sbjct 138714 AAATCT-ATGAT 138724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164811427640