Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq644 242 5e-59 seq373 141 1e-28 >seq644 Length=250981 Score = 242 bits (268), Expect = 5e-59 Identities = 572/851 (67%), Gaps = 22/851 (3%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||| | |||||| |||||||||| |||||| |||| || || ||||| | || ||| Sbjct 138724 ATCAT-AGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCTGAGGAGA 138666 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | ||||| |||||||| || |||| ||| | | || | |||| ||||| | Sbjct 138665 TTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCT 138606 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 || | || ||||| | || ||||| || | ||| ||||| ||||||||||| || || | Sbjct 138605 TTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCG 138546 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248 | || |||||| | ||| | || || |||| |||| |||| ||||| ||||| Sbjct 138545 TCGAG-CGATTCAGTGGCGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGCTTCCA 138488 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 |||||||| |||||| | || || || | ||||| || || |||| ||||| Sbjct 138487 GATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAA 138428 Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || || | ||| || ||||| ||||| || || || | || | || || | Sbjct 138427 GGAGCCCGCCCAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 138369 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| || || |||||| | || | | || || | ||| | | | Sbjct 138368 AGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGCC 138309 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | || || || || || || ||||| |||||||| ||| || || ||||||| | Sbjct 138308 TCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCT 138249 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || |||||||| || ||||| | |||||| | || ||||| | Sbjct 138248 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTG 138189 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| || ||| |||||||||| || || | ||| | | | | || Sbjct 138188 ACGAGGGTCTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGG 138138 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||||| | | | | || | || | || |||||||| | || || || | Sbjct 138137 GTCGTGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGG 138078 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || |||||| | || || | | | |||||||||| | || ||| Sbjct 138077 AGTTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGC 138018 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 | ||||| ||||| || || |||||||| || || ||||| || ||| | | Sbjct 138017 AATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCT 137961 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 137960 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 137901 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 137900 TCTTCGAGAAG 137890 >seq373 Length=75118 Score = 141 bits (156), Expect = 1e-28 Identities = 316/465 (68%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 21860 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 21919 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | || Sbjct 21920 GTCTTCGATTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGAT 21979 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | ||| || || ||| | || ||| | ||||||||||| || || |||||| Sbjct 21980 CTTTTTCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 22037 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||| ||| || || || || || |||| |||| || || ||| Sbjct 22038 -ACTGGACACTGATGTGTCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 22096 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| |||||| | |||||| | || |||| | || | || Sbjct 22097 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACCA-TCAAGGC 22155 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| Sbjct 22156 TC-AGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 22213 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 22214 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 22273 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||||| |||||| | |||||| |||| |||||| Sbjct 22274 TCCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAG 22318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050205393960