Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq373 210 3e-49 seq644 129 7e-25 >seq373 Length=75118 Score = 210 bits (232), Expect = 3e-49 Identities = 628/962 (65%), Gaps = 24/962 (2%) Strand=Plus/Minus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 22342 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 22283 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 ||| || | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 22282 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 22223 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 22222 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 22164 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACA 62987 | || ||||||| || | ||| | ||| | ||| ||||| | |||| Sbjct 22163 GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 22107 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 |||||||| ||||| | | | | || ||||| || || | |||||||||| Sbjct 22106 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCA 22047 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 22046 GTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGA 21987 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 ||| ||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 21986 GAAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAAT 21927 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| | Sbjct 21926 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 21867 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| || | || | ||| ||||| || | || | | ||| |||| || ||||| Sbjct 21866 CACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 21807 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGA 63345 | |||||||| ||||| || | ||| || ||| | ||||||||| | | ||| Sbjct 21806 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT-- 21749 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 |||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 21748 TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 21689 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 ||||| ||||| || ||| |||| | || | || || |||| ||| | || Sbjct 21688 TCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTGAGG 21629 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || ||||| || | || || ||||| || || || | || ||| | ||||| Sbjct 21628 GGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATT 21569 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC------CCATTGATGAATTCCTACTGCGACACG 63579 ||| ||||| | || || ||||| |||| || || || | ||||| Sbjct 21568 GTATGTCTCCAAGACTCGCTCGATATCATCACCCCAT------ATACCAACAGACACACG 21515 Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639 ||| | |||||||||||| | || || ||||| || || || | | ||| ||| Sbjct 21514 CATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCG 21455 Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63699 |||||||| || || ||||| || | |||| || || || || || | ||| | || Sbjct 21454 CTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGA 21395 Query 63700 GT 63701 || Sbjct 21394 GT 21393 >seq644 Length=250981 Score = 129 bits (142), Expect = 7e-25 Identities = 363/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 138175 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 138234 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 |||||| || ||||| || ||||| || || | ||| ||||| || || || || || Sbjct 138235 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 138294 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 32850 |||||||||| || | || || | || | | || || ||||| | || | Sbjct 138295 AGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 138353 Query 32851 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 32910 |||| || ||||||||| | || || || ||||| || || || ||||||||| || Sbjct 138354 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 138413 Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 | || || | ||||| || || | || || | || |||||||||| Sbjct 138414 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 138473 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030 | || || || || || ||||||||||| | |||||| | ||||| || || || Sbjct 138474 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 138533 Query 33031 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33090 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 138534 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 138593 Query 33091 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33147 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 138594 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 138653 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 | || | ||| | || || | ||||| ||||| ||||| ||||| || ||||| | || Sbjct 138654 TGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTTCTTGTACATTTGCC 138713 Query 33208 AGATGTCATGAT 33219 | || | ||||| Sbjct 138714 AAATCT-ATGAT 138724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624309291600