Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq644 109 1e-18 seq312 95.1 3e-14 >seq644 Length=250981 Score = 109 bits (120), Expect = 1e-18 Identities = 297/444 (67%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCG-GGA 243343 || ||||| |||| ||||| |||| | ||| ||||| ||||| || | ||| | || Sbjct 138324 TCCTTTGCCCAGCGCCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGTGGT 138268 Query 243344 GT-TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 | ||| | ||||||| ||||| ||| ||| | |||||||| || | | || Sbjct 138267 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCC 138208 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| ||||| ||| |||||||| |||||| | || | || | | || Sbjct 138207 AACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCT 138148 Query 243463 AAGCTCCAGAA-CAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | ||| || | || | || | | | | || | | |||||||| || || || Sbjct 138147 CACCTCAAGGGTCGTGCCAGCAAGC-AGATGATCCAGGATATCATCACTGATGCCGTCAC 138089 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | || |||| ||| | ||| ||| |||| || || | |||||||||||||| Sbjct 138088 CATTGAGCAGGAGTTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGA 138029 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| || ||||| || ||||| || || || | | |||| ||||| | || Sbjct 138028 CCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGA 137969 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| || ||||| ||| |||||||| | ||| |||||| ||| || ||| || || Sbjct 137968 GAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAA 137909 Query 243702 AACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 137908 GACCAACTTCTTCGAGAAGCGTGT 137885 >seq312 Length=645821 Score = 95.1 bits (104), Expect = 3e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| ||| | | ||| | || ||| | ||| || ||||| || ||| | |||| | Sbjct 52336 AGTCGATGGTGGTCATCTCAGTATCAGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 52395 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| || |||||||| ||| Sbjct 52396 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 52454 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 52455 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 52514 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 52515 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 52574 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 52575 AGATCCTCACC 52585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866279138850