Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq373 181 1e-40 seq644 152 6e-32 seq140 82.4 9e-11 >seq373 Length=75118 Score = 181 bits (200), Expect = 1e-40 Identities = 1098/1730 (63%), Gaps = 65/1730 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 23252 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 23193 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 23192 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 23134 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 23133 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 23074 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| ||||| |||| || ||| | ||| | ||||| Sbjct 23073 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATG 23014 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 23013 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 22957 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 22956 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 22901 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| || Sbjct 22900 CTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTT 22841 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || |||| || |||| || ||| || ||||| || || | |||||| ||||| || Sbjct 22840 ATTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGAAGACTGTTACG 22781 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | | | Sbjct 22780 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCCGAGGGC 22723 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| ||||||||||||||||| | || || || || |||| || || Sbjct 22722 TTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGATGCGGGGGAACCCTTGAAGGTG 22663 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| |||||||| Sbjct 22662 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAA 22606 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | ||| Sbjct 22605 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG- 22547 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || ||||| ||||| || ||||| || || || | ||| Sbjct 22546 CAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCAT 22487 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || | || Sbjct 22486 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAAGTT 22427 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | || ||||| | | | || | || || |||| Sbjct 22426 GCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTC 22373 Query 116412 ATTG-ACATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATC 116465 || | | | | | | ||||| | || || || || || |||| | ||| || Sbjct 22372 ATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTC 22313 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | || |||||| |||||||| || || | || || || ||||| || | ||| Sbjct 22312 AGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTT 22253 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||| || ||| ||| || ||||||||||||||||| |||| | || ||||| Sbjct 22252 CTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTC 22193 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 116644 || |||| || ||||| || | ||| | | || | | || | ||| ||| | Sbjct 22192 AGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGAC 22137 Query 116645 GC---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 | ||||||| |||||||||| ||| || ||||| ||||| || || ||| || Sbjct 22136 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCG 22078 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | ||| || || || | ||||| | || | ||| | ||| || ||||| ||| Sbjct 22077 GCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGC 22018 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG-AAGAGATCCCGACAGCGAGCTTCTTC 116819 |||||||| || || |||||||| || | |||| || ||||| || || | || || Sbjct 22017 TTCATGAAAAGATCAGGGATCCAAAG-GGCGAGAAAAAGATCACGGGCACGGACCTCCTC 21959 Query 116820 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879 | || || || ||| | || | || || | || ||| | |||||| || || || Sbjct 21958 CTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAG 21899 Query 116880 GTACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 ||| | || | | ||| | || | | ||| |||||| ||||||| || || Sbjct 21898 GTAGATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATACCGAGCAGTGT 21840 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-AT 116993 ||| || || |||||||| |||| | ||||| ||| || || || || ||| | Sbjct 21839 TGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGT 21780 Query 116994 ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 117053 | ||| | | || | | | ||| | | | ||||||||| || ||| ||| || Sbjct 21779 ATGAGCC--AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGA 21722 Query 117054 GATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 117113 ||| || || | ||||| | ||||||| || || || ||| |||| | | Sbjct 21721 GATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATC 21662 Query 117114 GATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGT 117173 | | |||||| |||| ||| ||| || || || || |||||||| || || | Sbjct 21661 AACCAAGAAGCAAGATGACAATTGAGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGA 21602 Query 117174 CGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC 117221 || || ||| | | |||| |||||| || ||| ||||||||||| Sbjct 21601 AGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 21554 >seq644 Length=250981 Score = 152 bits (168), Expect = 6e-32 Identities = 311/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 137875 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 137934 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| |||| ||| Sbjct 137935 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 137989 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||| | ||| ||||||||||| |||| |||| Sbjct 137990 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 138049 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || |||| ||| ||||||| || || || | ||| Sbjct 138050 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 138109 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 138110 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 138166 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || ||||| |||||| ||| Sbjct 138167 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGC 138226 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 138227 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCC 138286 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || ||| || || |||| || |||| |||||||||| Sbjct 138287 TCAACAGCAGCAAAGGCAACGAGGCGCTGGGCAAAGGAG 138325 >seq140 Length=258955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 177742 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 177801 || |||||||||||| || || || |||||||| || |||||| || ||| ||| |||| Sbjct 91373 CAGCTTGGCACCGTAACCGTTTCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 91432 Query 177802 TGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGGATTCCAAATACCCTCCTTTTCGTG 177861 | || || || || || |||||| |||| || ||| | | || |||||||||||| Sbjct 91433 GGAACCCGCCAGCAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 91492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499753556360