Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq644 196 5e-45 seq239 131 2e-25 seq238 114 1e-20 seq49 109 5e-19 >seq644 Length=250981 Score = 196 bits (216), Expect = 5e-45 Identities = 549/831 (66%), Gaps = 29/831 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 137891 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 137950 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||| | || |||| || || | || || |||||| Sbjct 137951 GTGGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACAAGGAGACGATCAGCGACGAAC 138007 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTC 132800 || ||||||||| |||| || | || | || || || |||| || | | ||||| Sbjct 138008 TCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG-GCACAGGGAAGAGCTTC 138066 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAAC-----GCGC 132855 |||||| || ||||| |||| ||| || || |||| ||| ||| | || Sbjct 138067 GGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTT 138126 Query 132856 GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915 || | || || || ||| | || | | | ||| |||||||| || | Sbjct 138127 GCTG-GCACGACCCTTG----AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGA 138181 Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | || ||||| |||||| |||||||| || |||||||| || || || Sbjct 138182 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTC 138241 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| |||||| || ||||||| ||||| || || || || Sbjct 138242 TTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAG 138301 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATT 133093 || || ||||||| | | || | || || || |||| ||||| || | ||||| | Sbjct 138302 GCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGG--ATCCATCGGATGGCCCAGT 138359 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 | ||||| | | || ||| || || || || |||||||| || | | || ||| || Sbjct 138360 CAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGAT--AGGTTCGCTG 138417 Query 133154 CCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 || | | ||| |||||||||||| || || | || || || | |||||| Sbjct 138418 GGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGTTCTC 138477 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 ||| ||| || |||||||| ||||| || ||||| | ||| || || | ||| Sbjct 138478 CATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCACTGAA 138537 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 |||||||| || || ||||||||||| || || ||| ||||| || || || | ||| Sbjct 138538 TCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGATGTG 138597 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388 || || |||| | | | | ||| | ||||||| | |||||||| Sbjct 138598 AGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGA 138657 Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | |||||| | ||||| || || ||||| || || |||||||| Sbjct 138658 GAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTTCTTGTACAT 138708 >seq239 Length=387333 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 57982 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 58041 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 58042 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGA 58100 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| ||||| ||||| || || | |||||||| | |||||| Sbjct 58101 CCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 58160 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 58161 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 58199 >seq238 Length=169348 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 99298 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 99239 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 99238 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 99179 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 99178 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 99119 Query 38433 G 38433 | Sbjct 99118 G 99118 >seq49 Length=115138 Score = 109 bits (120), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||| || | || |||||| | || Sbjct 25505 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 25446 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| | || | Sbjct 25445 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 25388 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || || | || || || |||||||| Sbjct 25387 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACA 25328 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 25327 ACATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 25290 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || ||||| ||| Sbjct 25277 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 25218 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| || ||| | || | Sbjct 25217 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 25160 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || |||||||| || | |||||| | | |||||||| Sbjct 25159 AGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGACTACA 25100 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || | || || || | | ||||||| Sbjct 25099 ACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCC 25049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| ||||||||| | || || ||| | |||| | | Sbjct 25727 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACC 25668 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | |||| || || | ||||| ||||| || || | ||||| ||||| Sbjct 25667 ATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 25608 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || || || || || || |||| || ||||| |||||||||||| ||| Sbjct 25607 CTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAA 25548 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 25547 AAGGAATCTACTCTTCATCTCGTCCTCCG 25519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166729152640