Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq373 244 1e-59 seq183 104 3e-17 seq181 89.7 6e-13 >seq373 Length=75118 Score = 244 bits (270), Expect = 1e-59 Identities = 1088/1694 (64%), Gaps = 63/1694 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 23220 CGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 23162 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| ||||| |||||||| ||||| Sbjct 23161 GATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 23102 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || | | ||| | | |||||||||| Sbjct 23101 GGCACCTCGATCAGCAGCCATCTGAACGA----CCTGGCGCTGAGAGATCTCCCAGACAG 23046 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 ||||||||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 23045 TCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 22986 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 22985 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 22932 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || || || |||||| Sbjct 22931 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGA 22872 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | |||||||| ||||| ||||| || ||||| || || || | || || | Sbjct 22871 TATTGGAGGTGTAGGGCTCGAAGCACTCGTTATTGCCCAGAATCTGGGAGGTACTGGCAG 22812 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | |||||||||||| |||| || | ||||| || ||| || | Sbjct 22811 TAGGCATAGGAGCAAGGAGAAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 22752 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | | | | | || | | |||||| || || | Sbjct 22751 GAGTCTCCCAGTCCCAGAGGTC-CGAG-----GGCTTGACGTTCCACATGTCAAACTGGA 22698 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||||||||| | ||| | ||||| ||| |||| Sbjct 22697 GGATACCCTCAGATGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 22638 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || ||||| || ||||| || || || || || Sbjct 22637 GCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGC---TTGTTG 22582 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | || || || || || |||| || || Sbjct 22581 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAAGGAAAGCATCGGCAAG 22523 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 || |||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 22522 GCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 22463 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || | || | ||| || ||| | Sbjct 22462 AGGGTAGTGGTTCACATCGATGATCTTGTTCAAGTTGCGAATAACAACCTGACTGACCTT 22403 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 || || || | | | ||| | | | || | || |||| | ||| |||| | Sbjct 22402 GTGCAGCTTCTTGAAGTCGTA-GCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACA 22344 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | ||| || | |||||| || | Sbjct 22343 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGC 22284 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 | | |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 22283 AAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 22224 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 22223 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 22164 Query 110471 -CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || | | | | | || |||| | | || |||| ||||||||| ||||| Sbjct 22163 GCTTCTGAGCCTTG-ATGGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 22107 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || |||| |||||| || | || || || || |||||| | | Sbjct 22106 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCA 22047 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | | ||| | || || ||||| | ||||||||| || ||||| ||||| | || | Sbjct 22046 GTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGC-G 21988 Query 110648 AGAAAAGG-TCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||||| | |||||| ||| |||| || | ||| ||||| || || || | || Sbjct 21987 AGAAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAA 21928 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGATCCCTTACGA 110760 || | || ||| |||||||| || ||||| |||| || | || || ||| Sbjct 21927 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG 21868 Query 110761 CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 | |||| |||| ||||| || || ||| |||||||| | |||||||||| || Sbjct 21867 CCACCC---TGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACA 21811 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 |||| ||| ||| || ||||| || || | | |||||||| ||| | | Sbjct 21810 CCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACA 21751 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATA 110939 | | |||||||||||| ||| ||| || ||||| ||| |||| ||| | || Sbjct 21750 TTTAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTA 21692 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACG 110999 || || ||||| || |||| | ||| | |||||||| |||| ||||| | Sbjct 21691 GATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTG 21632 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATC 111057 ||| || || ||||||||||| || || | ||||| ||| ||| |||| |||||| Sbjct 21631 AGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA--AGAACTTGCTAGACATC 21574 Query 111058 TTGTTGTATGTGTC 111071 |||||||| || Sbjct 21573 AGATTGTATGTCTC 21560 >seq183 Length=219137 Score = 104 bits (114), Expect = 3e-17 Identities = 250/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 135545 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 135487 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || ||||||||||| || ||||| | Sbjct 135486 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAAGA 135427 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | ||| | Sbjct 135426 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGTCCGA 135367 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 135366 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 135309 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| ||||| |||| || || | |||||||| |||||||| | ||||| | | Sbjct 135308 CTCGCCAGCTGTGGCCTTGGCAAGCAATGTCTTACCAGTACCAGGGGGGCCAGCTAAGAT 135249 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 135248 AGCACCTCGAGGGATCTTGGCACCCAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 135192 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 135191 GCTCACAAACTCC 135179 >seq181 Length=113960 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 82880 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 82821 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 82820 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 82761 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 82760 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 82709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968851303800