Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 6e-16 seq238 86.0 4e-12 >seq49 Length=115138 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||||||| || || || || Sbjct 25087 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAGCTGCTTACCAGCGAA 25145 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 25146 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 25205 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || || || || | ||| ||||| ||||| |||||||||||||| Sbjct 25206 GTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTCAC 25265 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 25266 GAAAATCTGCATA 25278 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| | |||| |||| | || || || || ||||| ||||| Sbjct 25542 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 25601 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| ||||||| || || Sbjct 25602 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 25661 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| || | |||||| || | ||| ||||| || || ||||| ||| Sbjct 25662 GTCGATGGTATCG---GAC--GACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 25716 Query 34965 TTCAC 34969 || || Sbjct 25717 TTGAC 25721 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 25825 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 25884 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| ||||| |||||| Sbjct 25885 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 25944 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 25945 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACG 26004 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 26005 AAGATCTGCAT 26015 >seq238 Length=169348 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || || |||| |||| || ||||| || || || || || Sbjct 99120 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 99179 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| || ||||| | || | |||||||||||| ||||| ||||| || | Sbjct 99180 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 99235 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||| || |||| ||| ||||| || ||||| || |||||||| Sbjct 99236 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 99295 Query 34970 AAA 34972 || Sbjct 99296 GAA 99298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629758265688