Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq644 152 8e-31 seq373 118 2e-20 seq121 111 2e-18 seq29 98.7 2e-14 >seq644 Length=250981 Score = 152 bits (168), Expect = 8e-31 Identities = 236/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | |||||| |||| |||| || |||||||| || ||| Sbjct 138181 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA--CCAGGCATGAGACCACGC 138238 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||||||| ||| || ||| ||||| ||||| || || ||| Sbjct 138239 TTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 138298 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | ||||| |||| |||||| | | | ||| | | |||||| || ||| Sbjct 138299 AAGGCAACGAGGCGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCC 138355 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576 || || ||||| || | | |||| | || || |||||| ||||| | ||| | Sbjct 138356 CAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCG- 138414 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | || ||||||| ||| |||||||||||||| ||||||||||| || || ||||| Sbjct 138415 CTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGTT 138474 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 138475 CTCCATCATGATCTGGAAGCCGTAGAAGCA 138504 Score = 120 bits (132), Expect = 5e-21 Identities = 184/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 137860 GACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 137919 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 137920 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 137979 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||| || || || |||||||| |||||||| || ||||||| | | |||| Sbjct 137980 AGCGA--CAAGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTC 138037 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| ||||| | ||| || |||||| Sbjct 138038 ATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCA 138097 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 138098 TCAGTGATGATAT-CCTGG 138115 >seq373 Length=75118 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || |||| || || || Sbjct 21862 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 21803 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 21802 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 21743 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 21742 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 21683 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 21682 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGAGGCTGAGGGGTGCC 21623 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||||||||| Sbjct 21622 GGCATTGAAGAGCGTGGG 21605 >seq121 Length=110875 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||| || || || || | || || |||||||| |||||| | | Sbjct 76586 CCAACTACCTCGACATCAAACCTCTTCTTGACGTTGGCTGTAAGACCGTTGCCAACATGA 76527 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| |||||||| |||||||| || || ||||| | | ||| Sbjct 76526 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATTACGAACG 76476 >seq29 Length=216961 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| ||| Sbjct 4944 GTACTTGGTAACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 4885 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | ||||||||||| |||| Sbjct 4884 GATGAGACGGACAGAAGTCTGGATCTCTCGGG 4853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916143110301269