Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq373 203 3e-47 seq239 145 7e-30 seq49 136 4e-27 >seq373 Length=75118 Score = 203 bits (224), Expect = 3e-47 Identities = 1003/1570 (64%), Gaps = 49/1570 (3%) Strand=Plus/Minus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 22941 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 22882 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | ||| || | || || || ||||||| ||||||| |||||| | | Sbjct 22881 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTATTGCCCAGAATCTGGGAG 22822 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | || || ||| || | ||| | | || | | Sbjct 22821 GTACTGGCAGTAGGCATAGGAGCAAGGAGAAGACTGTTACGGATGCCGTGTGTCTTGACT 22762 Query 148413 TTGCGCTTCA-GAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 | | || | ||| | ||||||||||||| ||| || | |||||||||||||| | Sbjct 22761 TC-CTCTCGAAGAGTCTCCCAGTCCCAGAGGTCCGAGGGCTTGACGTTCCACATGTCAAA 22703 Query 148472 CTGCAGAATGCCG-CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 ||| || || || | | | |||||| |||| | | | | ||| || || | | || Sbjct 22702 CTGGAGGATACCCTCAGAT-GCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 22644 Query 148531 CCGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTG 148589 ||||| | ||| | || ||| || ||| ||||| |||||| || ||| || Sbjct 22643 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTG 22585 Query 148590 TTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 |||||| ||| ||| | ||| | ||||||||||| | || || ||| Sbjct 22584 TTGAGCTCACGAGCC---TCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCG 22528 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 |||||||| || || || | |||||||| ||||| ||||| | ||| || | Sbjct 22527 GCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCC 22468 Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT 148765 | || || |||||||| |||||||||||| ||||| ||||| | || |||| | Sbjct 22467 TGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAAG-TTGCGAATAACAACCTGACT 22409 Query 148766 AATTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCAC 148819 | || ||||| | || ||||| | | ||||| || |||| | | || Sbjct 22408 GACCTTGTGCAGCTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAG 22349 Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 | | |||||| || ||||| || || ||| || || || | |||||| | || || Sbjct 22348 AGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTC 22289 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||| || ||| || | ||| || | ||||||||| |||||||||| |||||| Sbjct 22288 AGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 22229 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAA 148996 || |||||||| |||||| | || || || || ||| | || | || | | Sbjct 22228 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 22169 Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA 149050 || | || | ||| || |||| || || | |||| ||||||| |||||| Sbjct 22168 CCAA---AGCTTCTGAGC-----CTTGATGGTC-TTGCGACCCTTGCCCTCCTTCTCGTA 22118 Query 149051 --TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| | Sbjct 22117 CTTTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCG 22060 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 | || ||||| || | ||| | |||| | | || |||||||| || ||||| || Sbjct 22059 TTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGG 22000 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | ||| || ||| | || || || || | || || || ||| || Sbjct 21999 ATCCAAAGGGCGAGAAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGG 21940 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 || | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 21939 AGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCG 21880 Query 149289 TTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||| ||||| ||||||||||| | || | ||||||| || || |||| |||| Sbjct 21879 GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATA 21820 Query 149346 GGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACT 149405 || ||| ||| | | || ||||| ||| | ||| ||| || || | Sbjct 21819 GGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATA 21760 Query 149406 TTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464 |||||| || | || || || || ||| | ||| ||||| || ||| ||| Sbjct 21759 CGGTGCACATTTAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAG 21701 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 || |||||| ||||| || |||||| |||||| | || ||||| || ||| Sbjct 21700 AGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAA 21641 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCT 149583 ||| || | | |||||||| ||| | |||||| || || || || | || || Sbjct 21640 TTGAGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCT 21581 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 | ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 21580 AG-ACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCATATACCAACAG 21522 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | || Sbjct 21521 ACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGT 21462 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | || | |||||| |||||||||| | ||| | || |||||| | | | ||| Sbjct 21461 ATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAA 21402 Query 149764 TGGCGGCGTC 149773 |||| | ||| Sbjct 21401 TGGCAGAGTC 21392 >seq239 Length=387333 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 58182 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 58124 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||||||||| ||||| || |||||||| |||||| || Sbjct 58123 CAGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACT 58064 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 58063 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 58004 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 58003 TCTTGACGAAAATCTGCAT 57985 >seq49 Length=115138 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 25819 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 25878 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || ||||||||||| |||||||| |||||||| |||||| |||| Sbjct 25879 GCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 25938 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| | ||| || |||| ||| | ||| |||||||||| || Sbjct 25939 ACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAAGGTC 25998 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 25999 TTGACGAAGATCTGCATG 26016 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || |||||||| || Sbjct 25081 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAGCTGCTTACC 25139 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| || |||||||| ||||| ||| Sbjct 25140 AGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTT 25199 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| || || || | ||||| ||| || || || ||||| Sbjct 25200 CACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGT 25259 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 25260 CTTCACGAAAATCTGCAT 25277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414932480040