Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq644 179 5e-39 seq373 105 1e-16 >seq644 Length=250981 Score = 179 bits (198), Expect = 5e-39 Identities = 275/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || || Sbjct 138597 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 138539 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | |||||||| | || ||||| |||| || ||||| ||||||||| || Sbjct 138538 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 138479 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| || || || |||||||| ||||| |||||||| ||| ||||||| || | Sbjct 138478 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGC 138419 Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | || | ||| | ||||| |||||| || || | || | | | || ||||| | Sbjct 138418 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 138360 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||||| || |||||| | | ||| | || | ||||||| |||| ||||| | Sbjct 138359 ACTGGGCCATCCGATGGATCCAGGATAAGGAC-TCCTC-CTTTGCCCAGCGCCTCGTTGC 138302 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 |||||| || || ||||| ||||| ||| || ||| | ||||||| |||||||| Sbjct 138301 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAA 138242 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| || |||||||| ||||| Sbjct 138241 GAAGCGTGGTCTCATGCCTGGTCT 138218 >seq373 Length=75118 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| ||||||||||| || | || || || || ||||| || | || Sbjct 21605 CCCACGCTCTTCAATGCCGGCACCCCTCAGCCTCAATTGTCATCTTGCTTCTTGGTTGAT 21664 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 21665 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 21724 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | | ||| | || || | ||| | ||| | Sbjct 21725 AAGATGGCTGGTGGTATTGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 21784 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || || || |||| || |||||||| || || ||| |||| Sbjct 21785 GCCGGTACCAACGGTACATCGAATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 21844 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 21845 GCTCGGTATGTCGACCAG 21862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177717545265302