Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq373 172 8e-38 seq644 114 2e-20 >seq373 Length=75118 Score = 172 bits (190), Expect = 8e-38 Identities = 554/852 (65%), Gaps = 16/852 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | || || ||||| ||| ||||| |||||||| || || || Sbjct 22267 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 22208 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| |||| | || | ||| | | ||||| | ||| || || Sbjct 22207 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 22148 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 ||||||| || ||| ||| || || || | | ||| | |||| ||||| || Sbjct 22147 ---GGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTCC 22093 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||||| | || | | ||||| || || || |||||||||| || ||| || | Sbjct 22092 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCG 22033 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| || ||||| || ||||| || |||||||| || | ||| ||||| | | Sbjct 22032 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGAAAAAGATCACGG 21973 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | || || || || || || ||||| || || || | | |||||| Sbjct 21972 GCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAG 21913 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| || || || || || || | | || ||||| || || || ||||| || | Sbjct 21912 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 21853 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || | |||||||| || |||| | ||||| |||| || |||||| ||| |||| || Sbjct 21852 TACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTG 21793 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || | || || || | || |||||| | | |||||| || || || Sbjct 21792 GTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCA 21733 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||||| || ||||| | ||||| || | || || || || ||||| || || || Sbjct 21732 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 21673 Query 69946 TCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004 || |||| | || ||||| || | |||| |||| | || || || ||||| || Sbjct 21672 TCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGAGGCTGAGGGGTGCCGGCATTGAA 21614 Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064 | || || || || || ||||| | || ||| | |||||||||||| || | | Sbjct 21613 GAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 21554 Query 70065 TGATTCTATATC--CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 | || ||||| | | || || || | | |||||||| | ||| |||||||| Sbjct 21553 TCGCTCGATATCATCACCCCAT--ATACCAACAGACACACGCATGATCATGTGCTGAGGG 21496 Query 70123 CGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCA 70182 || || || | ||| | || || | ||||||||| |||| ||| || || ||| Sbjct 21495 CGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCA 21436 Query 70183 AAATAGTTGTAT 70194 || || | |||| Sbjct 21435 AAGTATTGGTAT 21424 >seq644 Length=250981 Score = 114 bits (126), Expect = 2e-20 Identities = 363/559 (65%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || ||||| || | | || | ||||| || || || || Sbjct 138160 GCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAG 138219 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||||||||| |||||||| || |||| || || | ||| ||||| Sbjct 138220 ACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAA 138279 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TG 39792 ||| || || || || ||||| ||||| || | || | | | || ||| || Sbjct 138280 GATACCCTCAACAGCAGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTG 138339 Query 39793 TATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | || ||||| ||||| ||||| | || || || || || || || | Sbjct 138340 GATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 138398 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||||| | | | || || | ||||| || || | || || Sbjct 138399 TGAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGG 138458 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||| ||||| || ||| ||||| || ||||| || || | || |||| | Sbjct 138459 TCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGA 138518 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| || |||| || | | || || || || || |||||| || | Sbjct 138519 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAG 138578 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCC 40088 | || || || | | || | ||| | | ||||| | || | || |||| Sbjct 138579 CGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCC 138638 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | || ||| || || | ||| | || ||||| ||||| || || ||||| |||| Sbjct 138639 AGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCT 138698 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 138699 TCTTGTACATTTGCCAAAT 138717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900462644440