Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq373 246 4e-60 seq644 122 1e-22 seq181 91.5 2e-13 >seq373 Length=75118 Score = 246 bits (272), Expect = 4e-60 Identities = 1145/1788 (64%), Gaps = 51/1788 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 23259 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 23200 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 23199 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 23141 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 23140 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 23083 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | || ||| || || | || ||||| || || || ||| ||||| | Sbjct 23082 ATCTGAACGAC---CTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACA 23026 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 23025 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 22966 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 22965 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 22906 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 22905 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 22846 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || ||||| |||| || || | ||| ||| || ||||| || || | | ||||||| Sbjct 22845 TCGTTATTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGAAGACTG 22786 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTGAGC 110854 ||||| | || | ||||| ||||| ||| | |||||||| || | | Sbjct 22785 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCC 22729 Query 110855 TTGGT-TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTC 110913 || || || |||| ||||||||||||| || | || | || ||||| ||||||| Sbjct 22728 GAGGGCTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGATGCGGGGGAACCCTT 22670 Query 110914 AAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 110972 ||||| |||| ||| | | | ||||| | ||| | || |||| |||| Sbjct 22669 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGT 22611 Query 110973 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 111032 |||| ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 22610 GATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-GC 22552 Query 111033 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 111091 | ||| | || || |||| || || ||||||||||| | |||||| |||| ||| Sbjct 22551 ATACGCAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGG 22492 Query 111092 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 ||||| ||| || || || || || || || || || |||| ||| Sbjct 22491 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 22432 Query 111152 AGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 111211 | || |||||| || ||| | || || || | | || | || || Sbjct 22431 AAGTTGCGAATAACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAGCT 22375 Query 111212 TCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 || || | ||| | || || | | || || | ||||| ||||| ||| Sbjct 22374 TCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCG 22315 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 22314 TCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGG 22255 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || ||| Sbjct 22254 TTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTC 22195 Query 111389 TCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG- 111446 || ||||| | | ||||| || | ||||| | || | | || | |||| ||| Sbjct 22194 TCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCG 22139 Query 111447 -CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTC 111504 ||| | |||||| |||||||||| ||| || || || |||||||| || ||| Sbjct 22138 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 22079 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 || ||| || || || || ||||| | || | ||| | ||| | ||||| || Sbjct 22078 GGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACG 22019 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623 |||||||||||| || || ||||| |||| ||| ||||| | ||| || |||| | Sbjct 22018 CTTCATGAAAAGATCAGGGATCCAAAGGGCGAGAAAAAGATCACGGGCACGGA-CCTCCT 21960 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | ||| ||||| || | |||||||| || | || ||| | |||||| ||||| | Sbjct 21959 CCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGA 21900 Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| || | || || ||| ||| | || | ||||| || || ||| Sbjct 21899 GGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGT 21840 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-AT 111798 ||| || || |||||||| |||| || ||||| ||| ||| || || || ||| | Sbjct 21839 TGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGT 21780 Query 111799 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 | ||| | | || | | | || | | | |||||||| |||||| ||| || Sbjct 21779 ATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGA 21722 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 ||| ||||| | | ||||| | ||||| || | || ||| ||||| | | Sbjct 21721 GATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATC 21662 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 | | ||||||| |||| || || || || || ||||||||||| || || | Sbjct 21661 AACCAAGAAGCAAGATGACAATTGAGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGA 21602 Query 111979 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 || || ||| | | |||| |||||| | ||||||||||||||| || || Sbjct 21601 AGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATA 21544 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || || | | || ||||||| ||||| ||| ||| Sbjct 21543 TCATCACCCCATATACCAACAGACACACGCATGATCATGTGCTGAGGG 21496 >seq644 Length=250981 Score = 122 bits (134), Expect = 1e-22 Identities = 332/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 137876 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 137935 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 137936 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 137990 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||| | ||| ||||||||||| |||| |||| Sbjct 137991 GACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 138050 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 138051 CACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 138110 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 138111 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 138167 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || ||||| ||||| |||| Sbjct 138168 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 138227 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | || | | ||| | || |||||||||||||| Sbjct 138228 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCT 138287 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| ||||| |||| ||||| | ||| |||||| ||| ||| | | | |||| Sbjct 138288 CAACAGCAGCAAAGGCAACGAGGCGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 138346 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 138347 CGGATGGCCCAGTCAGCCTTCTT 138369 >seq181 Length=113960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||| ||| |||||| ||| | || || | Sbjct 82880 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 82821 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 82820 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 82761 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 82760 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 82708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024377261600