Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq373 214 2e-50 seq644 159 4e-34 seq140 86.0 8e-12 >seq373 Length=75118 Score = 214 bits (236), Expect = 2e-50 Identities = 1099/1724 (64%), Gaps = 53/1724 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 23252 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 23193 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 23192 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 23134 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 23133 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 23074 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| |||||| |||| || ||| | ||| | ||||| Sbjct 23073 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATG 23014 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 23013 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 22954 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 22953 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 22894 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| || | | |||||||||| ||||| ||||| |||||||| || || ||| Sbjct 22893 GCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTATTGCCC 22834 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | |||||| |||||||||| || Sbjct 22833 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGAAGACTGTTACGGATGCCG 22774 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | | || | | Sbjct 22773 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCCGAGGGCTTGACGT 22716 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| ||||||||||||||||| | || || || || |||| || || || | Sbjct 22715 TCCACATGTCAAACTGGAGGATACCCTCAGATGCGGGGGAACCCTTGAAGGTGGAGTAGG 22656 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| |||||||| || || | Sbjct 22655 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCT 22599 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | |||||| || || || | | || || | | Sbjct 22598 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCA 22540 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| || || ||||| ||||| || ||||| || || || | ||| ||| Sbjct 22539 AGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 22480 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || | || | Sbjct 22479 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAAGTTGCGAATA 22420 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-AC 118696 ||||||| ||| | || ||||| | | | || | || || |||||| | | Sbjct 22419 ACAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAG 22366 Query 118697 ATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 22365 TTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCA 22306 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||| |||||||| ||||| | ||| || || ||||| || | ||||||||| Sbjct 22305 CAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG 22246 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| || ||||||||||| |||||| |||| | || ||||| || ||| Sbjct 22245 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGG 22186 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CC 118927 | || ||||| || | ||| | | || | ||| | ||| ||| | | || Sbjct 22185 GCCTCAAGAATGGCGTACCAAAGCTTCTG-AGC---CTTGATGGTCTTGCGACCCTTGCC 22130 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 ||| | |||||||||| ||| || || || ||||| || || | || | ||| || Sbjct 22129 CTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCC 22070 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || | || || | || | ||| | ||| || ||||| ||||||||||| Sbjct 22069 AGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAA 22010 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAG-AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 119106 || || |||||||| || | |||| || ||||| || || | || || | || | Sbjct 22009 AAGATCAGGGATCCAAAG-GGCGAGAAAAAGATCACGGGCACGGACCTCCTCCTTACCGT 21951 Query 119107 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 119166 | || ||| | || | || || | || ||| | |||||| || || ||||| | | Sbjct 21950 GGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGG 21891 Query 119167 CGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 | | | || | ||| | | ||| |||||| ||||||| |||||| ||| | Sbjct 21890 CAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATACCGAGCAGTGTTGTTGA 21834 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGA 119278 | ||||||||||| |||| | ||||| ||| || || || || ||| || ||| Sbjct 21833 AGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGC 21774 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 | | | || | | | ||| | | | ||||||||| || ||| ||| ||||| Sbjct 21773 C--AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCAT 21716 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 || || | ||||| | ||||||| || || || ||| |||| | | | | Sbjct 21715 GGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAA 21656 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| |||| ||||||| || || || || |||||||| || || | || || Sbjct 21655 GAAGCAAGATGACAATTGAGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATG 21596 Query 119459 GATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 ||| | | |||| |||||| | ||| ||||||||||| Sbjct 21595 CGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 21554 >seq644 Length=250981 Score = 159 bits (176), Expect = 4e-34 Identities = 311/454 (69%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 137876 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 137935 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 137936 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 137994 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||| | ||| || |||||||| |||| |||| ||| Sbjct 137995 ATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 138054 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 138055 GGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTG 138114 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 138115 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 138171 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 138172 AGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 138231 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 138232 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 138291 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 | || || |||| ||| |||| ||||||||| Sbjct 138292 AGCAGCAAAGGCAACGAGGCGCTGGGCAAAGGAG 138325 >seq140 Length=258955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || || || |||||||| || |||||| || ||| ||| |||| Sbjct 91373 CAGCTTGGCACCGTAACCGTTTCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 91432 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || || || || |||||| |||| || ||| | | || | |||||||||||| Sbjct 91433 GGAACCCGCCAGCAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 91492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427693742760