Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq373 215 7e-51 seq644 131 2e-25 >seq373 Length=75118 Score = 215 bits (238), Expect = 7e-51 Identities = 442/655 (67%), Gaps = 14/655 (2%) Strand=Plus/Minus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 ||||| || || || |||||||||| || ||| ||||| | | | ||| || ||||| Sbjct 22071 CCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATG 22012 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || |||||||| ||||| || || | ||| ||||| |||| | || || || || Sbjct 22011 AAAAGATCAGGGATCCAAAGGGCGAGAAAAAGATCACGGGCACGGACCTCCTCCTTACCG 21952 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||| ||||| ||||| || | | |||||| ||||| || || || || || Sbjct 21951 TGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATG 21892 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||| ||||| || || || ||||| || | ||| | |||||||| || | Sbjct 21891 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 21832 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || | | ||| |||| || || || |||||||| || || || | || || ||| Sbjct 21831 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCA 21772 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||||||| | | ||| || || || || ||||| || ||||| | ||| Sbjct 21771 GTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 21712 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG-AAGAAA 76968 ||| || | || || ||||| ||||| ||||| || ||| |||| | || ||||| Sbjct 21711 CAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAG 21652 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 || | |||| |||| | ||| || || ||||| || | || || || ||||| || Sbjct 21651 CAAGAT-GACAATTGAGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGT 21593 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCA 77082 ||| | || ||| | ||||||||||| || | ||| || |||| |||| Sbjct 21592 GAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCA 21533 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATT 77142 | || || |||| |||||||| | ||| |||||||| || || ||| ||||| Sbjct 21532 T------ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACC 21479 Query 77143 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 77197 | || || | | ||||||| |||||||| || || ||||| || | |||| Sbjct 21478 GTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAT 21424 >seq644 Length=250981 Score = 131 bits (144), Expect = 2e-25 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||| ||||| || || || | | || | ||||| || || || || Sbjct 138161 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 138220 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || |||||||| |||||||| || || | ||||| | ||| ||||| Sbjct 138221 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAG 138280 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GA 46806 || || || ||||| || || || || || | || | | || || |||| | Sbjct 138281 ATACCCTCAACAGCAGCAAAGGCAACGAGGCGCTGGGCAAAGGAGGAGTCCTTATCCTGG 138340 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||| |||||||| || | || || || || || || || || Sbjct 138341 ATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTG 138400 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || || | | || || | ||||| || || | || || | Sbjct 138401 AAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTC 138460 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||||||||| || || ||||| || ||||| || || | || |||| ||| Sbjct 138461 TCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATC 138520 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAGC 47045 || ||||| || ||||| || ||| | ||||| || || || |||||| ||||| Sbjct 138521 TGGACCTCGCCACTGAATCGCTC-GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 138579 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCA 47102 || || || | | || | ||| | | ||||| | ||| || || ||||| Sbjct 138580 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 138639 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 ||| | || ||| || || | ||| | || ||||| ||||||||||| ||||| || || Sbjct 138640 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAATGAAGCCTCAGCCTT 138699 Query 47163 TTTATACATATTCCATAT 47180 || ||||| | ||| || Sbjct 138700 CTTGTACATTTGCCAAAT 138717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925746758720