Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20Na10_20[genbank_20GCA_5F002234255.1_202017-07-27] 971 sequences; 46,623,205 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq49 123 6e-23 seq239 113 1e-19 seq238 93.3 1e-13 >seq49 Length=115138 Score = 123 bits (136), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||||||||| || ||||| |||||||| ||||| | |||| Sbjct 25515 GAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCG 25574 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| || || ||||| || | ||||||||| | | ||| || Sbjct 25575 GCCGTCTTCAAGTTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCC 25632 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || ||| | || | | | || || ||| || ||||| Sbjct 25633 TCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGG 25692 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || || ||||| ||||| ||||| |||| Sbjct 25693 GTGATGGTCTTGCCAGTGAGGGTCTTGACGA 25723 Score = 113 bits (124), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || || |||||||| ||||| || ||||||||||| ||| || || | Sbjct 25060 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 25119 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || ||||||||||| | |||||| || | | ||| || ||| Sbjct 25120 CCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCC 25179 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064 || || ||||| || || || | || | ||| ||| | || || ||||| | Sbjct 25180 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGA--TTCGACCTCAAGGG 25237 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || ||||||||||||||||| | |||||| Sbjct 25238 TGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 25277 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||||||||| ||||| || || ||||||||||| | | ||| | Sbjct 25797 GAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCG 25856 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || || |||||||| || |||| | |||||||| | | ||| || | Sbjct 25857 GCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGT-TGCTGGTCGGGGGGGATGCCCT 25915 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || ||||| | || | |||| ||| ||| || || || | Sbjct 25916 CCTTGTCCTGGATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGG 25975 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || | ||||| ||||||| |||||| Sbjct 25976 TAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 26015 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| || || ||||||||||| |||| | ||||| ||||| || | Sbjct 25299 CAAG-TGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAA 25357 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||| || |||| | || || ||||| || || | Sbjct 25358 GTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGA 25417 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | | || || ||| ||||| |||||||| || || | Sbjct 25418 TCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTC 25477 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 25478 CAGTAAGGGTCTTGACGAAGATTTGCAT 25505 >seq239 Length=387333 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| ||| | || | Sbjct 58203 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 58144 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | ||||||||| | | ||| || || Sbjct 58143 GCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTC 58084 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 58083 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 58024 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || || || |||||||| ||||| ||||| | |||||| || || Sbjct 58023 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 57979 >seq238 Length=169348 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||||| ||||| || || || || |||||||| Sbjct 99120 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 99179 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 99180 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 99239 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||||||||| Sbjct 99240 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 99298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806445387541