Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq40 122 8e-23 seq43 100 2e-16 >seq3 Length=2226179 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 467587 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 467528 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| ||||| || || ||||||||||| Sbjct 467527 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 467468 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 467467 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 467408 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 467407 CCCGTGAGGGTCTTGACGAAAATCTGCAT 467379 >seq40 Length=4096408 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||||||| ||||| ||| || ||||| || ||| Sbjct 1050831 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAGCTGCTTACCA 1050890 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| ||||| || ||||||||||| ||| || || Sbjct 1050891 GCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 1050950 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| || |||||||| | ||| | || || || || || || Sbjct 1050951 ACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGTGTC 1051010 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 1051011 TTCACGAAAATCTGCAT 1051027 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | |||||| ||||| ||||| || || Sbjct 1051572 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 1051631 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | || ||||| ||||| || |||||||||||||| ||| || || Sbjct 1051632 GCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 1051691 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||||| ||| | || |||||||||| || Sbjct 1051692 ACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 1051751 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 1051752 TTGACGAAGATCTGCATG 1051769 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||| || || || |||||||| ||| | ||| || |||||| Sbjct 1051047 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCA 1051106 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||| ||||||| ||||| ||||| ||||| || ||||||||||| Sbjct 1051107 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACCCTCCTTGTC 1051162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||||||||| ||| | || || || || || || |||||| Sbjct 1051287 GTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCA 1051346 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || ||||| |||||||||||||| ||| || ||| Sbjct 1051347 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTA 1051406 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| ||||| | ||| | || ||||| || || || Sbjct 1051407 ACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1051466 Query 118722 TTTAC 118726 || || Sbjct 1051467 TTGAC 1051471 >seq43 Length=2346381 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||| || |||||| ||||| || |||||| |||| Sbjct 1477403 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1477344 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || || ||||||||||| || || || || | ||| Sbjct 1477343 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1477284 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 1477283 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1477224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830172645756