Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 154 3e-32 seq39 109 1e-18 >seq3 Length=2226179 Score = 154 bits (170), Expect = 3e-32 Identities = 301/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || ||||||||||||||||| ||||| || || |||||| Sbjct 1539052 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGTGCCTTCGCCTCTATCTTCTGG 1539111 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | ||| Sbjct 1539112 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGAC 1539171 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT----GTTGA--AAAAGGGTTTTGTTGAT 102091 ||||||||||| |||||||| ||| | || | | |||||| || Sbjct 1539172 GAAGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTG----- 1539226 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| ||| | | ||| | || || ||| ||| |||||| ||||| || || Sbjct 1539227 ---CCAGTAAG-CAGATGATCCAGGATATCATCATTGATGCCGTCACCATTGAGCAGGAG 1539282 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || ||||| | | || || | | | || ||||||| | | |||| ||| Sbjct 1539283 TTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAG 1539342 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| || || || ||| || | || | | || || ||| ||| || Sbjct 1539343 TACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAATGAGAAGGTCTACAAG 1539402 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||||| |||||||| || || ||||| | ||||||||||| || Sbjct 1539403 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTC 1539462 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 1539463 GAGAAGCGTGTTGCCGACTACCA 1539485 >seq39 Length=4506647 Score = 109 bits (120), Expect = 1e-18 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| |||||||| || || |||||||| Sbjct 1598921 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATA 1598980 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT-CCACA 94910 || || || | | ||| | |||||| || || | |||||| ||| | | || Sbjct 1598981 CTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGC-TGAGGGGTGCCGGC 1599039 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||| || || |||||||||||||| || || | | || |||||||||| ||||| || Sbjct 1599040 ATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATGAGATTGTATGTCTC 1599099 Query 94971 AATGACAGATTTGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 | ||| | ||| || | | || || | || |||| ||||||||| ||||||| || Sbjct 1599100 CAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGATCATGTGCT 1599158 Query 95030 GAGGGCGCTCAAC 95042 |||||||||| || Sbjct 1599159 GAGGGCGCTCGAC 1599171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583454801065