Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39 187 3e-42 seq3 134 2e-26 >seq39 Length=4506647 Score = 187 bits (206), Expect = 3e-42 Identities = 631/974 (65%), Gaps = 18/974 (2%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1598317 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1598376 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | ||| || || | || | ||| |||||||| ||| || ||||| Sbjct 1598377 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATC 1598436 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 1598437 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1598496 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTATA 63181 | ||||||| || | ||| | |||| | || ||||| | ||| | Sbjct 1598497 CTTTTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACA 1598552 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241 | | |||||||| ||||| | | | | | | ||| || || | |||||||| Sbjct 1598553 GAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACAT 1598610 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 || | ||| || |||| | | || || ||||| || |||||||| |||||||| || Sbjct 1598611 CAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGC 1598670 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 | || ||||| | | | ||||| || || ||||| ||||| ||||| Sbjct 1598671 AAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAA 1598730 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 1598731 ATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTT 1598790 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || ||||| || | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 1598791 GCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACC 1598850 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATT 63539 || ||| |||| |||||||||| ||| || ||| | ||||||||| | | ||| Sbjct 1598851 ATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT 1598910 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 |||||| || || || ||||| || ||||| | || || || | || || ||| Sbjct 1598911 --TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAG 1598968 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || || || || || |||| | | | || || |||| |||| | || Sbjct 1598969 ATTCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGCTGA 1599028 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || ||||| || | || || ||||| ||||| || | || ||| | ||| Sbjct 1599029 GGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATGAGA 1599088 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 63778 ||||| ||||| | || || ||||| || || | || || | |||||||| Sbjct 1599089 TTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCAT 1599147 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 | |||||||||||| | || ||||| || || || || | | ||| ||| || Sbjct 1599148 GATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTAAGGAGGTATGATCGCTC 1599207 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 |||||| || || ||||| || | |||| || || || || |||| ||| | || | Sbjct 1599208 CAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAAACAATGGCAGAGTC 1599267 Query 63899 GAGCTTATCCTTAT 63912 | || ||||||| Sbjct 1599268 CAACTCCTCCTTAT 1599281 >seq3 Length=2226179 Score = 134 bits (148), Expect = 2e-26 Identities = 364/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||| ||||| | | || | ||||| || || || || || ||||| || || Sbjct 1539183 GTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1539124 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || || || ||||| | || ||||||||| || || || || Sbjct 1539123 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAACAGC 1539064 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 1539063 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1539005 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 1539004 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1538945 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | ||||| | || || ||||| | || || | || |||||||||| Sbjct 1538944 GCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1538885 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 1538884 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1538825 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 1538824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1538765 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 1538764 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1538705 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1538704 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1538645 Query 34129 AGATGTCATGAT 34140 | || | ||||| Sbjct 1538644 AAATCT-ATGAT 1538634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817261473040