Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq39 230 3e-55 seq3 129 8e-25 >seq39 Length=4506647 Score = 230 bits (254), Expect = 3e-55 Identities = 634/960 (66%), Gaps = 20/960 (2%) Strand=Plus/Plus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || || || || || ||||| | || | | || | || ||||||||||| Sbjct 1598317 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1598376 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| | ||||| || | || | ||| |||||||| ||| || ||||| Sbjct 1598377 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATC 1598436 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | || || ||| |||| | || | ||| || | ||| | Sbjct 1598437 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1598496 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATAT 79854 | ||||||| || | |||| | ||| | ||| ||||| | | ||| | Sbjct 1598497 CTTTTGAGCCTTGATGGT---CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 1598553 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | | |||||||| ||||| | ||| | | ||||| || |||| ||||||||| Sbjct 1598554 AGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATC 1598611 Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 | | ||| || || | || ||| || || ||||| || |||||||| |||||||| | Sbjct 1598612 AGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 1598669 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | | || ||||| | || | |||||| || || ||||| ||||| |||| Sbjct 1598670 CAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGA 1598729 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 | | | | |||||| ||||| || || | ||| ||||| | | | || ||||| |||| Sbjct 1598730 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 1598789 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || ||||| || | || | ||| ||||| || | || | | ||| |||| || || Sbjct 1598790 TGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACAC 1598849 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAAT 80210 |||| |||||||| ||||| |||| ||| || ||| | ||||||||| | | || Sbjct 1598850 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 1598909 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 | |||||| || || || ||||| || ||||| | || || || | ||||| || Sbjct 1598910 T--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTA 1598967 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| ||||| || || || || |||| | | | || || |||| |||| | | Sbjct 1598968 GATTCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGCTG 1599027 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 | || || ||||| || | || || ||||| ||||| || | || ||||| || Sbjct 1599028 AGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATGAG 1599087 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCA 80449 |||||| ||||| | || || ||||| || || | || || | ||||||| Sbjct 1599088 ATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCA 1599146 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | |||||||||||| | || || ||||| | || || | | ||| ||| | Sbjct 1599147 TGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTAAGGAGGTATGATCGCT 1599206 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 ||||||| || || ||||| || | |||| || || || || |||| ||| | |||| Sbjct 1599207 CCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAAACAATGGCAGAGT 1599266 >seq3 Length=2226179 Score = 129 bits (142), Expect = 8e-25 Identities = 363/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| ||||| ||||| | | || || |||||||| || || || || ||||| || || Sbjct 1539183 GTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1539124 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || || || | ||| ||||||||| || || || || Sbjct 1539123 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAACAGC 1539064 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CTTTTGAG 50149 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 1539063 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1539005 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 1539004 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1538945 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | ||||| | || || ||||| | || || | || |||||||||| Sbjct 1538944 GCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1538885 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 1538884 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1538825 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 1538824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1538765 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | ||| | || | | |||| | || ||||| || | || ||| | Sbjct 1538764 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1538705 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1538704 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1538645 Query 50507 AGATGTCATGAT 50518 | || | ||||| Sbjct 1538644 AAATCT-ATGAT 1538634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268413930520