Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq39 197 2e-45 seq3 141 1e-28 >seq39 Length=4506647 Score = 197 bits (218), Expect = 2e-45 Identities = 622/957 (65%), Gaps = 14/957 (1%) Strand=Plus/Plus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1598317 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1598376 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 ||| || | ||| || || | || | ||| |||||||| ||| || ||||| Sbjct 1598377 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATC 1598436 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 1598437 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1598496 Query 63077 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACA 63132 | ||||||| || | ||| | |||| | || ||||| | |||| Sbjct 1598497 CTTTTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACA 1598552 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 |||||||| ||||| | | | | | ||||| || || | |||||||||| Sbjct 1598553 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCA 1598612 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63252 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 1598613 GTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAA 1598672 Query 63253 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63312 || ||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 1598673 GGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAAT 1598732 Query 63313 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63372 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| | Sbjct 1598733 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 1598792 Query 63373 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63432 | ||||| || | || | ||| ||||| || | || | | ||| |||| || ||| | Sbjct 1598793 CACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 1598852 Query 63433 TTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGA 63490 | ||| |||| |||||||||| ||| || ||| | ||||||||| | | ||| Sbjct 1598853 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT-- 1598910 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 |||||| || || || ||||| || ||||| | || || || | || || ||||| Sbjct 1598911 TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 1598970 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 ||||| || || || || |||| | | | || || |||| |||| | || Sbjct 1598971 TCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGCTGAGG 1599030 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 || || ||||| || | || || ||||| ||||| || | || ||| | ||||| Sbjct 1599031 GGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATGAGATT 1599090 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| ||||| | || || ||||| || || | || || | |||||||| | Sbjct 1599091 GTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGA 1599149 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| | || || ||||| || || || | | ||| ||| |||| Sbjct 1599150 TCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTAAGGAGGTATGATCGCTCCA 1599209 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 |||| || || ||||| || | |||| || || || || |||| ||| | |||| Sbjct 1599210 AAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAAACAATGGCAGAGT 1599266 >seq3 Length=2226179 Score = 141 bits (156), Expect = 1e-28 Identities = 360/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||| ||||| | | || || |||||||| || || || || ||||| || || Sbjct 1539183 GTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1539124 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || || || ||||| | ||| ||||||||| || || || || Sbjct 1539123 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAACAGC 1539064 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33493 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 1539063 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1539005 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 1539004 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1538945 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | ||||| | || || ||||| | || || | || |||||||||| Sbjct 1538944 GCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1538885 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 1538884 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1538825 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 1538824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1538765 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 1538764 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1538705 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1538704 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1538645 Query 33851 AGAT 33854 | || Sbjct 1538644 AAAT 1538641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946865165880