Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 134 3e-26 seq41 107 4e-18 seq40 98.7 2e-15 seq39 95.1 2e-14 >seq3 Length=2226179 Score = 134 bits (148), Expect = 3e-26 Identities = 385/587 (66%), Gaps = 19/587 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 1539464 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1539405 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| || |||||| || || | || || || || || ||||| | Sbjct 1539404 GCCTTGTAGACCTTCTCATTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1539345 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| || || || | Sbjct 1539344 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGG 1539285 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-----TGCCA 251794 || |||| || ||| || || || | || ||| ||| ||| || || Sbjct 1539284 AACTCCTGCTCAATGGTGACGGCATCAATGATGATATCCTGGATCATCTGCTTACTGGCA 1539225 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 ||| |||| || | |||| ||||| | |||| | ||| ||||| | Sbjct 1539224 -CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCTT 1539173 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| ||| ||||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 1539172 CGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCTTGA 1539113 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | | |||| ||| || | | |||||| ||| | | |||| Sbjct 1539112 GCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAACAGCAGCAAAGGCAA 1539053 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCT 252031 | || |||| ||||| || ||||| | || | || | ||||| | |||| Sbjct 1539052 CGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCAGCCT 1538993 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 |||||| | ||| || || || || || | |||||| || | |||| ||| | Sbjct 1538992 TCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGGGCGGGCT 1538933 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 | | |||| | || | ||||| ||||| |||| ||||| ||| Sbjct 1538932 CTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATG 1538886 >seq41 Length=2948229 Score = 107 bits (118), Expect = 4e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 1735992 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 1735933 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 1735932 CAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1735873 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 1735872 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 1735814 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 1735813 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 1735768 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| || || || ||| ||||| |||| ||| || Sbjct 1734590 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCCTCGCCGCTT 1734531 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| | |||||||| |||||||||||||||||||| || || Sbjct 1734530 GCTCT-TGGCAGCGACCTCATCTTATCGTTCTTGACGAGCCTACCAACTATCTCGATCGT 1734472 Query 280821 GA 280822 || Sbjct 1734471 GA 1734470 >seq40 Length=4096408 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 2170338 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 2170397 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| ||||| || || || || || || ||||| | || ||||| | || Sbjct 2170398 GCGTGCCGACGTCCTCCTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 2170457 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 |||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 2170458 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 2170515 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 2170516 GACTCCGGATTCCTGGA 2170532 >seq39 Length=4506647 Score = 95.1 bits (104), Expect = 2e-14 Identities = 453/703 (64%), Gaps = 23/703 (3%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 1597540 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 1597598 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| |||||||||| |||||||| || | | | ||| || |||| Sbjct 1597599 AGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGTTGGGAATGTTCT 1597658 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCA--- 293289 | || || || | ||||| || |||||||||| | |||||||| || |||| Sbjct 1597659 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGT 1597718 Query 293290 CGAGCAATGAGCTCGCGGA-CAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGT 293348 ||| ||| | || | | | | ||| | |||||||| ||||||||||||||||| Sbjct 1597719 CGA-CAAGGTCCTTGAGCAGCCAGGGA----TTGACAACCTGGAACTCACCAGCGAGAAC 1597773 Query 293349 GCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTG 293408 || || ||| || || || ||| ||| ||| ||| || |||||| Sbjct 1597774 ACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 1597833 Query 293409 AGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTT 293465 | ||| || ||||||||| ||||| |||| ||| | | || | |||| Sbjct 1597834 GGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTT 1597893 Query 293466 GACACGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGA 293523 ||| | | ||| | |||| | |||||| ||| || || | || ||| | Sbjct 1597894 GACTTCCTCTCGAAGAGTCTCCCAATCCCAGAG--GTCCGAGGGCTTGACGTTCCACATG 1597951 Query 293524 TGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGC 293583 | | |||||| |||||||| || || || |||| ||||||| | ||| || | | Sbjct 1597952 TCAAACTGCAGGATACCCTCAGATGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCC 1598011 Query 293584 TCATCAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTC 293642 || | || |||| ||| || || | ||||| |||||| ||| ||||||| Sbjct 1598012 TCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTG 1598070 Query 293643 ACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACA-CAT 293701 |||||||| ||||||| || || || ||||| ||| | ||||| | ||| Sbjct 1598071 CTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAG-AGCAAGAAAAGCAT 1598129 Query 293702 CCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCT 293761 | || || || ||||| | ||||| ||| || | ||| |||| || | |||| Sbjct 1598130 CGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCT 1598189 Query 293762 CGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || | || ||||||| ||| || ||| |||||| Sbjct 1598190 CCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 1598232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836233726163