Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 365 8e-96 seq39 309 6e-79 >seq3 Length=2226179 Score = 365 bits (404), Expect = 8e-96 Identities = 596/846 (70%), Gaps = 18/846 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 1538650 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 1538709 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || || ||| | || |||| || || |||| | Sbjct 1538710 CTCCACGACTGGAA--CAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCTCACATCC 1538767 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 1538768 TTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGATTCAGTG 1538827 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | |||||| || |||||||||||||||||||| || |||||| Sbjct 1538828 GCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 1538887 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || ||| ||| || || || |||| |||||| || |||| | |||| | Sbjct 1538888 TTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAAGAGCCCGCCCAGCGAA 1538947 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 1538948 CCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 1539007 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | ||| | | || | | || | || || |||||| | || | Sbjct 1539008 TCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTG 1539067 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | ||||| |||||||| || ||||||||||| ||||||||||||||| || ||| Sbjct 1539068 TTGAGGGTATCTTCTTTAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC 1539127 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || || ||||| ||||| |||||| | ||||| || || || | Sbjct 1539128 TC-ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAAGGTCTTCACACT 1539186 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | | || ||| || | | Sbjct 1539187 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTG-CCAGTAAGCAGATGAT 1539242 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || ||||||| || ||||| || ||| ||||||||||||| | | || || Sbjct 1539243 CCAGGATATCATCATTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAAGCTCTTCC 1539302 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 1539303 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 1539361 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| | || | ||||||| | | |||||||||| Sbjct 1539362 ATCGTCTCCTTGTCGCTCTTGGCAATGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 1539420 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || |||||||||||||| | | |||||||||||||| ||||||||||| || |||||| Sbjct 1539421 TTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 1539480 Query 43140 TACCAG 43145 |||||| Sbjct 1539481 TACCAG 1539486 >seq39 Length=4506647 Score = 309 bits (342), Expect = 6e-79 Identities = 892/1345 (66%), Gaps = 47/1345 (3%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | || || ||||| ||||||| ||| | || ||| Sbjct 1597745 TTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGC 1597804 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 1597805 TCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGG 1597864 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 1597865 AGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTCC 1597915 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GC 244328 || ||| |||||||| | | |||| | |||||||||||||||||| | |||| | Sbjct 1597916 CAATCCC-AGAGGTCCGAGGGCTTGACGTTCCACATGTCAAACTGCAGGATACCCTCAGA 1597974 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 || ||||| |||| | |||| | ||||||||| || || ||||||| || | Sbjct 1597975 TG-CGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 1598033 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| || |||||||| |||||| |||||| | || || |||| | Sbjct 1598034 CAGT-GAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCG 1598092 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGAT 244506 | |||||| || | || | || ||| | | ||||| || || || || || | Sbjct 1598093 GGTGACTCGAAGGGCATACGCAG-AGCAAGAAAAGCATCGGCAAGGCCTTGAACACCAAG 1598151 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| Sbjct 1598152 ACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCA 1598210 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGA 244624 | ||||| | |||||| |||||||| | | || | ||| ||| | | || | || Sbjct 1598211 CATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTG 1598269 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| | | | || ||| | || ||| | | | || | || Sbjct 1598270 AAGTCGTA---GCAAGCTTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA-- 1598319 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||| ||||||||||| || ||||| || | ||||| || ||| || ||||| Sbjct 1598320 --GGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAA 1598377 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| || |||| || || || |||| ||||||||| ||| Sbjct 1598378 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCC 1598437 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 |||||||||||||| || |||||||| |||||| |||| | | || ||| || Sbjct 1598438 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGC 1598497 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | |||||||| ||| ||||| |||||||||| |||||| |||||| ||| Sbjct 1598498 TTTTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC 1598557 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACT 244983 |||||||| || || ||| | ||||| |||||| || ||| ||||| || | Sbjct 1598558 TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC-TCGTTGGGACACATCAGTGT 1598616 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || | || |||||| || || |||||||| ||||| |||| Sbjct 1598617 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAA 1598676 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || || | || | ||| ||| || |||||| | || || | || || || Sbjct 1598677 AAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAA 1598736 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || |||||| ||||| | ||||| || | || ||||| ||||||||||| || Sbjct 1598737 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 1598796 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||| | ||| | ||||| |||||||| || || |||| || | || | Sbjct 1598797 CTGGTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 1598852 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGC-CCCTGAGGTTGCTGATGGA 245277 | || |||||||| || |||||| | ||| | || | | | ||| || | Sbjct 1598853 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTA 1598912 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 | || | || || || ||||||||| | ||| ||| |||||| || || || Sbjct 1598913 GA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 1598970 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||||| || ||||| |||||| | | || ||||| || |||| ||||||| || Sbjct 1598971 TCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGCTGAGG 1599030 Query 245398 GCTGCACGAGTTGAACAGAGTGGGG 245422 | ||| | ||||| || |||||| Sbjct 1599031 GGTGCCGGCATTGAAGAGCGTGGGG 1599055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338692417680