Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 215 7e-51 seq12 93.3 5e-14 >seq1 Length=5220104 Score = 215 bits (238), Expect = 7e-51 Identities = 460/682 (67%), Gaps = 14/682 (2%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| |||||||| || ||||| | | |||||| | || | || || || || Sbjct 3000176 CTTGTGTTTACGCTTGAACTCATTAACGAAGTGGTTGACCAGACGGTTGTCAAAGTCCTC 3000235 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || ||||| | ||||| || |||||||| | |||||| | Sbjct 3000236 ACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 3000295 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || || || ||||| ||| | Sbjct 3000296 AAGGAGAGATACATCGAAGGTACCACCACCAAGATCGAAGATCAGAACGTTGCGCTCGCC 3000355 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| || |||||||| || || || || || || || || || || || || Sbjct 3000356 CTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCGTTGATGATTCG 3000415 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || ||||| || || |||||||| Sbjct 3000416 GAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAATCGTT 3000475 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 || ||||| ||||| || || || |||| |||| ||| || || || || || || Sbjct 3000476 GAAATAGGCAGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCAAGGTAAGACTCAGC 3000535 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCG 7826 | | || ||| ||||| || | ||| | || ||||| || | || | || || | Sbjct 3000536 GGTCTCGCGCATCTTGGTGAGGATCATAGCAGAGATCTCCTC-GGGGCTGAAGGTCTTGG 3000594 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---GGGGATAACCT 7883 | || || || || || || || || ||||| || || |||| | || | || Sbjct 3000595 TCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTTGTCGACGATCT 3000648 Query 7884 TATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAA 7943 | | | ||| ||||||||| | || |||| || | ||||| | ||||| | Sbjct 3000649 TGAAGGGGAAATGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGACCGATCA 3000708 Query 7944 GACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGT 8003 ||||| || || ||||| ||||| | |||||||| || ||||||||| || || | Sbjct 3000709 ATCGCTTGGCGTCGAAAACAGTGTTCTGAGGGTTCATAGCGACTTGGTTCTTGGCGGCAT 3000768 Query 8004 CCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCC 8063 | || || ||||| || | || || || ||||| | || ||||| ||||| || | Sbjct 3000769 CACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTAC 3000825 Query 8064 CTTGGTCGTTCGCAATAATTTC 8085 | |||||||| || || || || Sbjct 3000826 CCTGGTCGTTGGCGATGATATC 3000847 >seq12 Length=5052385 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 1774311 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 1774252 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 1774251 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 1774195 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 1774194 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 1774136 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 1774135 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 1774076 Query 7695 GTTG 7698 | || Sbjct 1774075 GCTG 1774072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132458616120