Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 143 3e-29 seq4 104 3e-17 >seq3 Length=2226179 Score = 143 bits (158), Expect = 3e-29 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | ||||| | || |||| || || | |||||| || || ||||| || Sbjct 1538953 CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGA 1539012 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | | || | | | | ||||||| |||| ||| | || ||||| |||||| Sbjct 1539013 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGA 1539071 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||||||||| |||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 1539072 GGGTATCTTCTTTAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 1539131 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328 ||| ||||| |||||||||||||| |||||||||||||| || || ||| || || Sbjct 1539132 GCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAAGGTCTTCACACTGACTT 1539191 Query 102329 TGC 102331 ||| Sbjct 1539192 TGC 1539194 >seq4 Length=1305649 Score = 104 bits (114), Expect = 3e-17 Identities = 227/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGG---TTGATTTTCGCGAGCGA 16113 ||| | |||||||| || || ||||| || ||| || || ||| |||| || || | Sbjct 1293586 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCC-GC-A 1293643 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | ||||| || || || |||||||| || ||||||||||| ||||| |||| | | Sbjct 1293644 GTG--AAGAGGTCACGGACTCGCTTGGCACCGACACCAACAAAGATCTCGTCAAA-CTCG 1293700 Query 16174 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 1293701 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 1293760 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 |||||||| || || || ||| | |||||| |||| || | || || ||| Sbjct 1293761 GTCTTACCAGTGCCAGGAGGACCGACTAGGAGGACACCCTTGGGCAGTTTAGCACCAAGA 1293820 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 16352 | | | | || || | ||| ||||| || |||| |||| | || |||||||| Sbjct 1293821 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 1293880 Query 16353 GCGTCAATCCCCTCAACATCGGTAAACCGAGT 16384 ||||| || | ||||||| | |||||||| Sbjct 1293881 TCGTCACAACCATGAACATCGTTGAACCGAGT 1293912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742066350960