Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq39 239 5e-58 seq1 89.7 6e-13 >seq39 Length=4506647 Score = 239 bits (264), Expect = 5e-58 Identities = 1025/1599 (64%), Gaps = 57/1599 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | || Sbjct 1597531 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 1597586 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 | | ||| | | ||||||||||||||||||| | ||||| || | || |||| Sbjct 1597587 CCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGT 1597646 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 1597647 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1597703 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 1597704 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGGAACT 1597760 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || || || ||||||| || | |||||||| ||||| ||||| |||| Sbjct 1597761 CACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 1597820 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 1597821 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 1597880 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | |||||||| | | | | | | Sbjct 1597881 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTC-CGAG-----G 1597934 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || || ||||||||||| Sbjct 1597935 GCTTGACGTTCCACATGTCAAACTGCAGGATACCCTCAGATGCGGGGGAACCCTTGAAGG 1597994 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || ||||| Sbjct 1597995 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAA 1598053 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || |||||||| || || || |||| |||| ||| | |||||||| | | Sbjct 1598054 ATGGTCTCAAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATA 1598110 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || ||| |||| || || || |||||||| ||||||||||| || || Sbjct 1598111 CG-CAGAGCAAGAAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCG 1598169 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 1598170 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 1598229 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || ||| | || | || | | | ||| | | | || Sbjct 1598230 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCTTCAT 1598288 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| |||| | ||| ||||| ||||| |||| |||||| Sbjct 1598289 CGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 1598348 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | ||| || | |||||| || || | |||||| || ||| ||| | ||||| Sbjct 1598349 GAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 1598408 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 1598409 TTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 1598468 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501 |||| | || ||||||||| | ||| | | || || || |||| | | Sbjct 1598469 TCTGGGCCTCGAGAATGGCGTACCAAAGCTTTTGAGCCTTGATGGTCTTGCG--ACCCTT 1598526 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || |||| ||||||||| ||||| |||| || |||| |||||| || | || Sbjct 1598527 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 1598586 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || || |||||| | || | ||| | || || ||||| | |||||| Sbjct 1598587 GCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCAT 1598646 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || ||||| ||||| | || |||||| |||||| ||| |||| || | ||| Sbjct 1598647 GAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACC 1598706 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| || || || | || || | || ||| |||||||| || ||||| |||| Sbjct 1598707 GTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 1598766 Query 110742 AGCGAT------GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 || | || || ||| | |||| |||| ||||| || || ||| || Sbjct 1598767 GGCAAAAGCACCGGGTCGCTTGTTGCCACCC---TGGTCGACATACCGAGCAGTGTTGTT 1598823 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 |||||| | |||||||||| || |||| ||| ||| || ||||| || || Sbjct 1598824 GAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGA 1598883 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | | |||||||| ||| | || | |||||||||||| ||| ||| || Sbjct 1598884 GCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCAT 1598943 Query 110916 TGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| |||| ||| | || || || ||||| || |||| | | | | Sbjct 1598944 GGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCCACCA 1599002 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 |||||||| |||| || || |||| || || ||||||||||| || || | |||| Sbjct 1599003 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCAT 1599062 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| ||| |||| ||||| |||||||| || Sbjct 1599063 GCGTGA--AGAACTTGCTAGACATGAGATTGTATGTCTC 1599099 >seq1 Length=5220104 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 1546168 ATGGACGCATCGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 1546227 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 1546228 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 1546287 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 1546288 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 1546339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975683425400