Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq39 224 1e-53 seq3 120 4e-22 seq4 95.1 1e-14 seq1 87.8 2e-12 >seq39 Length=4506647 Score = 224 bits (248), Expect = 1e-53 Identities = 1140/1782 (64%), Gaps = 55/1782 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| |||||| Sbjct 1597400 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1597459 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || ||||||| || | || | |||||| | || |||| |||||| || Sbjct 1597460 TTGAGGCCAAGTTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1597518 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 | |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 1597519 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1597576 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || ||| ||| ||||| || Sbjct 1597577 ATCTGAACGACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCG 1597636 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 1597637 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1597693 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || ||||||| | Sbjct 1597694 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACC 1597753 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | | | ||||| || | |||||||| || ||||| Sbjct 1597754 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1597813 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1597814 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1597873 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTGAGC 106081 ||||| | || | | ||||| ||||| ||| | ||||| || || | | Sbjct 1597874 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCC 1597930 Query 106082 TTGGT-TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTC 106140 || || || |||| |||| ||||| || || | || | || | ||| ||||||| Sbjct 1597931 GAGGGCTTGACGTTCC-ACATGTCAAACTGCAGGATACCCTCAGATGCGGGGGAACCCTT 1597989 Query 106141 AAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 106199 || || |||| ||| | | | ||||| | ||| | || |||| |||| Sbjct 1597990 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGT 1598048 Query 106200 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 106259 |||| ||||| |||||||| | || | ||| || || ||| || || | | Sbjct 1598049 GATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-GC 1598107 Query 106260 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 106318 | ||| | || ||| |||| || || ||||||||||| | |||||| |||| ||| Sbjct 1598108 ATACGCAGAGCAAGAAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGG 1598167 Query 106319 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 106378 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1598168 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 1598227 Query 106379 AGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGT 106437 || || |||||| || ||| | || || || || | | || | || || Sbjct 1598228 AGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAGC 1598283 Query 106438 CTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 || || | ||| | || || | | || || | ||||| ||||| ||| Sbjct 1598284 TTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTC 1598343 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 1598344 GTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAG 1598403 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 ||||||||||||||||| |||||| |||||||||||||||||| | || | || || Sbjct 1598404 GTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGT 1598463 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG- 106672 ||| ||||| | || |||||| || | ||| | | | | | || | |||| ||| Sbjct 1598464 CTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTTTGAGCCTTG----ATGGTCTTGC 1598519 Query 106673 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 | || | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 1598520 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1598579 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 ||| ||| || || || || ||||| | || | ||| | ||| || ||||| | Sbjct 1598580 CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACAC 1598639 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTC 106848 ||||||||||||| || || ||||| |||| | | ||| ||||| | ||| || |||| Sbjct 1598640 GCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTC 1598697 Query 106849 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908 || | ||| ||||| || | |||||||| || | || ||| | |||||| ||||| Sbjct 1598698 CTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTC 1598757 Query 106909 AAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGT 106965 || |||| || | || || ||| ||| | || | ||||| || || || Sbjct 1598758 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGT 1598817 Query 106966 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA- 107023 | ||| || || |||||||| |||| || ||||| ||| ||| || || || ||| Sbjct 1598818 GTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGAT 1598877 Query 107024 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 107083 || ||| | | || | | | || | | | |||||||| |||||| ||| Sbjct 1598878 GTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTG 1598935 Query 107084 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 107143 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1598936 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 1598995 Query 107144 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 107203 | | | ||||||| |||| || || || || || ||||||||||| || || Sbjct 1598996 TCCACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGG 1599055 Query 107204 GTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAA 107261 | || || ||| | | |||| ||||| | ||||||||||||||| || | Sbjct 1599056 GAAGCATGCGTGA--AGAACTTGCTAGACATGAGATTGTATGTCTCCAAGACTCGCTCGA 1599113 Query 107262 TGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | || || || ||| || | | ||||||||| | ||||| Sbjct 1599114 TATCATCACCCCAGATACCAACAGACACACGCATGATCATGT 1599155 >seq3 Length=2226179 Score = 120 bits (132), Expect = 4e-22 Identities = 331/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 1539482 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1539423 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 ||||| || || || | || || | | | || |||| |||||||| Sbjct 1539422 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCATTGCCAAGAGCGACAAGGAGACG 1539364 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | || |||||||||||| ||| ||||||||||| |||| ||| ||| Sbjct 1539363 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 1539304 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || || || || |||| | | |||||| || || || | | ||| | || Sbjct 1539303 GGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAATGATGATATCCTG 1539244 Query 117225 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 ||| | | || ||| | | || | || | || ||| || |||||| || Sbjct 1539243 GATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 1539187 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 ||| ||||| || || || || || || || || ||||| || || |||||||| Sbjct 1539186 AGTGTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 1539127 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 ||| |||||||| | ||| | |||| | ||| | || |||||||||||||| || Sbjct 1539126 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAAC 1539067 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCA 117460 | ||||| |||| || |||| ||| |||||| ||| | || | | | |||| | Sbjct 1539066 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCATCGGA 1539008 Query 117461 TTGCCCATTTCGCCTTCTT 117479 | ||||| | |||||||| Sbjct 1539007 TGGCCCAGTCAGCCTTCTT 1538989 >seq4 Length=1305649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/332 (67%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGA 9420 ||| | |||||||| || || ||||| ||||| || || ||| |||| || | | Sbjct 1293586 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCCGCAGT 1293645 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||||| || || || | ||||| || ||||||||||| ||||| |||| | | Sbjct 1293646 G----AAGAGGTCACGGACTCGCTTGGCACCGACACCAACAAAGATCTCGTCAAA-CTCG 1293700 Query 9481 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 1293701 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 1293760 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTT 9599 |||||||| || || || ||| | |||||| ||||| || | || || ||| Sbjct 1293761 GTCTTACCAGTGCCAGGAGGACCGACTAGGAGGACACCCTTGGGCAGTTTAGCACCAAGA 1293820 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 9659 | | | | || || | ||| ||||| || |||| |||| | || |||||||| Sbjct 1293821 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 1293880 Query 9660 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 9691 ||||| || | ||||||| | ||||| || Sbjct 1293881 TCGTCACAACCATGAACATCGTTGAACCGAGT 1293912 >seq1 Length=5220104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || | || || ||||| ||||| ||| |||||| ||| | || || | Sbjct 1546168 ATGGACGCATCGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 1546227 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 1546228 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 1546287 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 1546288 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 1546340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980482885320