Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq40 154 3e-32 seq3 134 3e-26 seq43 129 1e-24 >seq40 Length=4096408 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||||||||| || ||||| |||||||| | ||||| | || || || Sbjct 1051559 AACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 1051618 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | ||||| ||||| || || ||||| || ||||| || Sbjct 1051619 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 1051678 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||| ||||| ||| || || || ||||| | ||||| Sbjct 1051679 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 1051738 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 1051739 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 1051768 Score = 132 bits (146), Expect = 1e-25 Identities = 165/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCT 194981 |||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || | Sbjct 1050810 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 1050868 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||||||||| || |||||||| || || || || ||||| || || || Sbjct 1050869 ACCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTC 1050928 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 ||||| ||||| || ||| ||||| || || ||||| ||| ||| || ||||| Sbjct 1050929 CTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTC---ACTGGATTCGACCTCAAG 1050985 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | ||||| Sbjct 1050986 GGTGATGGTCTTTCCAGTGAGTGTCTTCACGAAAATCTGCAT 1051027 >seq3 Length=2226179 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 467587 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 467528 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || || || || ||||| || Sbjct 467527 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 467468 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | |||||| Sbjct 467467 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 467408 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 467407 CCCGTGAGGGTCTTGACGAAAATCTGCAT 467379 >seq43 Length=2346381 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||||| ||||| || ||||||||||| |||||||| Sbjct 1477403 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1477344 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| |||||||| || ||||| || || ||||| || || || |||||| || || Sbjct 1477343 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1477284 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 1477283 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1477225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480988744981