Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq40 98.7 6e-16 seq43 86.0 4e-12 >seq40 Length=4096408 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||||||| || || ||||| Sbjct 1050837 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAGCTGCTTACCAGCAAA 1050895 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 1050896 GATAAGACGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 1050955 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || || || || | ||| ||||| ||||| ||||| |||||||| Sbjct 1050956 GTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTCAC 1051015 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 1051016 GAAAATCTGCATA 1051028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 1051578 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 1051637 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| |||||| |||||| Sbjct 1051638 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 1051697 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 1051698 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 1051757 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1051758 AAGATCTGCAT 1051768 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| | |||| |||| | || || || || ||||| ||||| Sbjct 1051292 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 1051351 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| ||||||| || || Sbjct 1051352 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 1051411 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| || | |||||| || | ||| ||||| || || ||||| ||| Sbjct 1051412 GTCGATGGTATCG---GAC--GACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1051466 Query 34965 TTCAC 34969 || || Sbjct 1051467 TTGAC 1051471 >seq43 Length=2346381 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || || |||| |||| || ||||| || || || || || Sbjct 1477403 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1477344 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| || ||||| | || | |||||||||||| ||||| ||||| || | Sbjct 1477343 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 1477288 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || ||| || |||| ||| ||||| || ||||| || |||||||| Sbjct 1477287 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1477228 Query 34970 AAA 34972 || Sbjct 1477227 GAA 1477225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633429871704