Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23 129 7e-24 seq39 116 5e-20 seq3 113 6e-19 >seq23 Length=4947561 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||||||||||||||| || || |||| |||||| | || ||||| |||| Sbjct 2428694 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAGACCGTTGCCAATATGA 2428635 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||||||||||||||| || || ||||| | | ||| Sbjct 2428634 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATTACGAACG 2428584 >seq39 Length=4506647 Score = 116 bits (128), Expect = 5e-20 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| ||| ||||| || ||||| || || | || || || Sbjct 1598797 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 1598856 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 1598857 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1598916 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || ||||| || |||||||| ||||| Sbjct 1598917 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1598976 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| ||||||| ||||| | ||||| || || ||| || || | ||||| Sbjct 1598977 AATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1599036 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||| |||||||||||||| | || ||||| |||| | |||||| Sbjct 1599037 GGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATG 1599085 >seq3 Length=2226179 Score = 113 bits (124), Expect = 6e-19 Identities = 203/289 (70%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| ||| ||| | |||||| || | || || |||||||| || ||||| Sbjct 1539177 ACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTT 1539118 Query 869239 CTTGAGCCAAAAGAT---GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 869295 ||||||||| ||||| |||| || || | | | || ||||| ||||| || || || Sbjct 1539117 CTTGAGCCAGAAGATAGAGGCGAAGGCAC--CACTA-AAGAAGATACCCTCAACAGCAGC 1539061 Query 869296 AAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGC 869355 |||| | | ||| |||| |||||||| | || | ||| | | |||||| || || Sbjct 1539060 AAAGGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGC 1539004 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 |||||| ||||| || | | | || | || || |||||| ||||| | ||| | Sbjct 1539003 CCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC- 1538945 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || || |||| || |||||||| ||||| || |||||||| Sbjct 1538944 GCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTC 1538896 Score = 107 bits (118), Expect = 2e-17 Identities = 177/252 (70%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 1539491 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 1539432 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| || || ||||||| Sbjct 1539431 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCATTGCCAAGAGCGACA 1539372 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || || ||||| ||||| |||||||| ||||||| | | ||||||||||| Sbjct 1539371 --AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 1539314 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || || || | ||| | | ||||| | ||| || |||||| || | || Sbjct 1539313 GGAGGGCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAATGA 1539254 Query 868929 TGATCTGCCTGG 868940 |||| | ||||| Sbjct 1539253 TGATAT-CCTGG 1539243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135671218631