Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13]
43 sequences; 45,458,781 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 6e-23
seq40 113 3e-20
seq43 102 5e-17
>seq3
Length=2226179
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| ||| |||| ||||
Sbjct 467590 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 467531
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| || || |||||||| | || | |||||||||||
Sbjct 467530 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 467471
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || |||| ||| || |||
Sbjct 467470 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 467411
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| || || ||||||||
Sbjct 467410 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 467379
>seq40
Length=4096408
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| || ||||||||| ||||| ||||| | | |||| ||||
Sbjct 1050816 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 1050875
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || ||||| || || ||||| || | || | |||||||||||
Sbjct 1050876 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTTGTCC 1050935
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| ||| ||||| |||| ||| ||||||
Sbjct 1050936 TGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTC 1050995
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| ||||| || || ||||||||
Sbjct 1050996 TTTCCAGTGAGTGTCTTCACGAAAATCTGCAT 1051027
Score = 113 bits (124), Expect = 3e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| ||| ||||||||||||||| || || || || |||| | ||
Sbjct 1051557 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 1051616
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| |||| ||||||||||| | || | |||||||||||
Sbjct 1051617 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1051676
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || || | ||| ||||||
Sbjct 1051677 TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1051736
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
|| || || | |||||| || ||||||||||||||
Sbjct 1051737 TTGCCGGTCAAGGTCTTGACGAAGATCTGCATGAT 1051771
>seq43
Length=2346381
Score = 102 bits (112), Expect = 5e-17
Identities = 135/185 (73%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || || ||||| || |||||||
Sbjct 1477405 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 1477346
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||||||| || ||||| | || | |||||||||||| | || || ||||| ||
Sbjct 1477345 TCAGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 1477289
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| || | ||| |||||||| ||||| ||||||||
Sbjct 1477288 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 1477230
Query 34964 ACAAA 34968
|| ||
Sbjct 1477229 ACGAA 1477225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692629316617
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |