Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq39 194 2e-44 seq3 140 3e-28 seq40 136 4e-27 >seq39 Length=4506647 Score = 194 bits (214), Expect = 2e-44 Identities = 1000/1569 (64%), Gaps = 47/1569 (3%) Strand=Plus/Plus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | |||| || ||||| ||||| || ||||| || || Sbjct 1597718 TCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGGAACTCACCAGCGAGAACACGG 1597777 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | ||| || | || || || ||||||||||||||| |||||| | | Sbjct 1597778 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 1597837 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | | || Sbjct 1597838 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTG-TGTCTTGAC 1597896 Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || | || |||| | |||| |||||||| ||| || | |||||||||||||| | Sbjct 1597897 TTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCCGAGGGCTTGACGTTCCACATGTCAAA 1597956 Query 148472 CTGCAGAAT-GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||||| || || | | | |||||| |||| | | | | ||| || || | | || Sbjct 1597957 CTGCAGGATACCCTCAGAT-GCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 1598015 Query 148531 CCGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTG 148589 ||||| | ||| | || ||| || ||| ||||| ||||| || ||| || Sbjct 1598016 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTG 1598074 Query 148590 TTGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 |||||| | ||| || | | ||| | ||||||||||| | ||| || ||| Sbjct 1598075 TTGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATACGCAGAGCAAGAAAAGCATCG 1598131 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 |||||||| || || || | |||||||| ||||| ||||| | ||| || | Sbjct 1598132 GCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCC 1598191 Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766 | || || |||||||| ||||||||||||| || ||||| | || |||| | Sbjct 1598192 TGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTG 1598251 Query 148767 ATTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCACG 148820 | || ||| | | || ||||| | | ||||| || |||| | | || Sbjct 1598252 ACCTTGTGCAACTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGA 1598311 Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 | | |||||| || ||||| || || ||| || || || | |||||| | || || Sbjct 1598312 GACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCA 1598371 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| || ||| || | ||| || | ||||||||| || ||||||| |||||| Sbjct 1598372 GTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTACTCTTGCGGTTGCAG 1598431 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAAC 148997 || |||||||| |||||| | || || || || ||| | || | || | || Sbjct 1598432 GCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTAC 1598491 Query 148998 CGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA- 149050 | | || | || || |||| || || | |||| ||||||| |||||| Sbjct 1598492 CAA---AGCTTTTGAGC-----CTTGATGGTC-TTGCGACCCTTGCCCTCCTTCTCGTAC 1598542 Query 149051 -TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGT 149109 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| || Sbjct 1598543 TTTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGT 1598600 Query 149110 GCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCA 149169 || ||||| || | ||| | |||| | | || |||||||| || ||||| || | Sbjct 1598601 TGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGA 1598660 Query 149170 CCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCA 149229 ||| || || | || || || || | || || || ||| || | Sbjct 1598661 TCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGA 1598720 Query 149230 GGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCT 149289 | | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 1598721 GATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGG 1598780 Query 149290 TGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAG 149346 ||| ||||| ||||||||||| | || | ||||||| || || |||| ||||| Sbjct 1598781 GTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAG 1598840 Query 149347 GTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT 149406 | ||| ||| | | || ||||| ||| | ||| ||| || || | Sbjct 1598841 GAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATAC 1598900 Query 149407 TGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 |||||| || | || || || || ||| | ||| ||||| || ||| ||| Sbjct 1598901 GGTGCACATTTAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGA 1598959 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || |||||| ||||| || |||||| |||||| || || ||||| || ||| | Sbjct 1598960 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAGCAAGATGACAAT 1599019 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTG 149584 || || | | |||||||| ||| | |||||| || || || || | || || Sbjct 1599020 TGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTA 1599079 Query 149585 GCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGC 149644 | ||| | | ||| | ||| | || || || || ||||| || ||| || | | Sbjct 1599080 G-ACATGAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGA 1599138 Query 149645 GACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTA 149704 || ||||| | ||| ||||| || ||||| | | || |||| || || | ||| Sbjct 1599139 CACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTAAGGAGGTA 1599198 Query 149705 GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAAT 149764 || | |||||| |||||||||| | ||| | || |||||| | | |||| Sbjct 1599199 TGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAAACAAT 1599258 Query 149765 GGCGGCGTC 149773 ||| | ||| Sbjct 1599259 GGCAGAGTC 1599267 >seq3 Length=2226179 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 467576 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 467518 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||| ||||| || |||||||| |||||| || Sbjct 467517 CAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACT 467458 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 467457 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 467398 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 467397 TCTTGACGAAAATCTGCAT 467379 >seq40 Length=4096408 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 1051572 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 1051631 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || ||||||||||| |||||||| |||||||| ||||| |||| Sbjct 1051632 GCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 1051691 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 1051692 ACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 1051751 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1051752 TTGACGAAGATCTGCATG 1051769 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || |||||||| || Sbjct 1050831 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAGCTGCTTACC 1050889 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || |||||||| || |||||||| ||||| ||| Sbjct 1050890 AGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTGCTCTT 1050949 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| || || || | ||||| ||| || || || || || Sbjct 1050950 CACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGTGT 1051009 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1051010 CTTCACGAAAATCTGCAT 1051027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420540161320