Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 172 8e-37 seq39 111 2e-18 >seq3 Length=2226179 Score = 172 bits (190), Expect = 8e-37 Identities = 306/432 (71%), Gaps = 16/432 (4%) Strand=Plus/Plus Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | || || Sbjct 1538761 CACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 1538819 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | |||||||| | || ||||| |||| || ||||| ||||||||| || Sbjct 1538820 ATTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1538879 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| || || || |||||||| ||||| |||||||| ||| |||| || || | Sbjct 1538880 GGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAAGAGCCCGC 1538939 Query 1456074 CGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | || | ||| | ||||| |||||| || || | || | | | || ||||| | Sbjct 1538940 CCAGC-GAACCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 1538998 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||||| || |||||| | | ||| | || | ||||||| |||| ||||| | Sbjct 1538999 ACTGGGCCATCCGATGGATCCAGGATAAGGAC-TCCTC-CTTTGCCCAGCGTCTCGTTGC 1539056 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCC---ATCTTTTGGCT 1456248 |||||| || || ||||| ||||| || | | | || || |||| ||||| ||||| Sbjct 1539057 CTTTGCTGCTGTTGAGGGTATCTTCTT-TAGTG--GTGCCTTCGCCTCTATCTTCTGGCT 1539113 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT-TCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||| || |||||||| ||||| || || |||||| | ||| ||| ||| Sbjct 1539114 CAAGAAGCGTGGTCTCATGCCTGGTCTGACT--TTCTCCAACGAGCTCATCTCTCGTGAC 1539171 Query 1456308 GAA-GTTTTCAC 1456318 ||| || ||||| Sbjct 1539172 GAAGGTCTTCAC 1539183 >seq39 Length=4506647 Score = 111 bits (122), Expect = 2e-18 Identities = 200/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| |||| ||| ||||| || | ||||||||||| ||||||||||| || | Sbjct 1599085 CATGTCT-AGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTTCAATGCCGGCACCCCTC 1599027 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 || || || || ||||| || |||| ||||||| ||| || ||||| |||| Sbjct 1599026 AGCCCCAATTGTCATCTTGCTTCTTGGTGGATATGAAGGACGACAGTATTGAGGGAATCT 1598967 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | || || |||||| || || | ||||||||| ||| || || || ||| | | Sbjct 1598966 ACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTAAATG 1598907 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || || | ||| | ||| | || || |||||||| || || || Sbjct 1598906 TGCACCGTATTCGTGCTACTGGCTCATACATCGCCGGTACCAACGGTACATCGAATGGTG 1598847 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| || |||||||| || || ||| |||| || || || ||||||||| Sbjct 1598846 TTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGGTATGTCGACCAG 1598797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807052570966