Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq40 125 7e-24 seq3 125 7e-24 >seq40 Length=4096408 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||| ||||| ||||||||||| || Sbjct 1051542 CCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 1051601 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || |||||||| || ||||| ||||| || Sbjct 1051602 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGG 1051661 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 1051662 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACC 1051721 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || ||||| || ||||| Sbjct 1051722 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1051768 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | |||||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 1050810 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 1050869 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| || | |||||||||||| || || || || || Sbjct 1050870 CCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGAGGGATACCCTCC 1050929 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 1050930 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTG 1050989 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || |||||||| ||||| Sbjct 1050990 ATGGTCTTTCCAGTGAGTGTCTTCACGAAAATCTGCAT 1051027 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || |||||||||||||||||||||||| ||| ||| | ||| || Sbjct 1051275 ACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCA 1051334 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || ||||| |||| |||||||| || || || ||||| || || || ||| Sbjct 1051335 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 1051394 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || |||||||| || || || || || ||||| || Sbjct 1051395 ATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTG 1051454 Query 134685 CCGGTTAAAGTTTTAACGA 134703 || || | || || |||| Sbjct 1051455 CCAGTGAGGGTCTTGACGA 1051473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| || |||||||||||| || || | || || || || Sbjct 1051052 GTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTG 1051111 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | ||||| ||||| || || || || || || || || || || Sbjct 1051112 CTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTT 1051171 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| || || || || ||||||||||| || || || Sbjct 1051172 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 1051231 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 1051232 AAGGGTCTTGACGAAGATTTGCAT 1051255 >seq3 Length=2226179 Score = 125 bits (138), Expect = 7e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | || ||||| || ||||| ||||| || ||||||||| Sbjct 467611 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 467552 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| | |||| | || |||||||| ||||| ||||| || | |||||||| ||| Sbjct 467551 TCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCG 467492 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || || || || || || || || ||||| ||| | |||||||| || Sbjct 467491 GGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 467432 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || || || || || || | || || |||||||| ||||| ||| Sbjct 467431 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 467375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398128348360