Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq39 244 1e-59 seq3 120 4e-22 seq1 87.8 2e-12 >seq39 Length=4506647 Score = 244 bits (270), Expect = 1e-59 Identities = 1149/1790 (64%), Gaps = 55/1790 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 1597400 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1597459 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || ||||||| || | || | |||||| | || |||| |||||| || Sbjct 1597460 TTGAGGCCAAGTTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1597518 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 1597519 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1597576 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | || ||| || || | || ||||| || || || ||| ||||| Sbjct 1597577 ATCTGAACGAC---CTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACG 1597633 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 1597634 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 1597693 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || ||||||| Sbjct 1597694 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACC 1597753 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | | ||||||| || | ||||| || || ||||| Sbjct 1597754 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1597813 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1597814 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1597873 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTGAGC 110854 ||||| | || | ||||| ||||| ||| | ||||| || || | | Sbjct 1597874 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAATCCCAGAGGTCC 1597930 Query 110855 TTGGT-TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTC 110913 || || || |||| ||||||||||||| || | || | || ||||| ||||||| Sbjct 1597931 GAGGGCTTGACGTTCC-ACATGTCAAACTGCAGGATACCCTCAGATGCGGGGGAACCCTT 1597989 Query 110914 AAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGT 110972 ||||| |||| ||| | | | ||||| | ||| | || |||| |||| Sbjct 1597990 GAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGT 1598048 Query 110973 GATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGT 111032 |||| ||||| |||||||| | || | ||| || || ||| || || | | Sbjct 1598049 GATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-GC 1598107 Query 111033 AGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 111091 | ||| | || ||| |||| || || ||||||||||| | |||||| |||| ||| Sbjct 1598108 ATACGCAGAGCAAGAAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGG 1598167 Query 111092 CGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1598168 CGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTC 1598227 Query 111152 AGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGT 111210 || || |||||| || ||| | || || || || | | || | || || Sbjct 1598228 AGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAGC 1598283 Query 111211 CTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 111267 || || | ||| | || || | | || || | ||||| ||||| ||| Sbjct 1598284 TTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTC 1598343 Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 || | | |||||| | |||||| || || | |||||| || || || || | Sbjct 1598344 GTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAG 1598403 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||||||||||||||||| |||||| |||||||||||||||||| | || | || || Sbjct 1598404 GTTCTTTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGT 1598463 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG- 111445 ||| ||||| | | |||||| || | ||||| | | | | || | |||| ||| Sbjct 1598464 CTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTTTGAGCCTTG----ATGGTCTTGC 1598519 Query 111446 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 | || | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 1598520 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1598579 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 ||| ||| || || || || ||||| | || | ||| | ||| | ||||| | Sbjct 1598580 CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACAC 1598639 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCTC 111621 ||||||||||||| || || ||||| |||| | | ||| ||||| | ||| || |||| Sbjct 1598640 GCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCTC 1598697 Query 111622 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || | ||| ||||| || | |||||||| || | || ||| | |||||| ||||| Sbjct 1598698 CTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTC 1598757 Query 111682 AAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGT 111738 || |||| || | || || ||| ||| | || | ||||| || || || Sbjct 1598758 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGT 1598817 Query 111739 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA- 111796 | ||| || || |||||||| |||| || ||||| ||| ||| || || || ||| Sbjct 1598818 GTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGAT 1598877 Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856 || ||| | | || | | | || | | | |||||||| |||||| ||| Sbjct 1598878 GTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTG 1598935 Query 111857 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 111916 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1598936 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 1598995 Query 111917 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 111976 | | | ||||||| |||| || || || || || ||||||||||| || || Sbjct 1598996 TCCACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGG 1599055 Query 111977 GTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAA 112034 | || || ||| | | |||| ||||| | ||||||||||||||| || | Sbjct 1599056 GAAGCATGCGTGA--AGAACTTGCTAGACATGAGATTGTATGTCTCCAAGACTCGCTCGA 1599113 Query 112035 TGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | || || || ||| || | | || ||||||| ||||| ||| ||| Sbjct 1599114 TATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1599163 >seq3 Length=2226179 Score = 120 bits (132), Expect = 4e-22 Identities = 331/499 (66%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 1539482 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1539423 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 ||||| || || || | || || | | | || |||| |||||||| Sbjct 1539422 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCATTGCCAAGAGCGACAAGGAGACG 1539364 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | || |||||||||||| ||| ||||||||||| |||| |||| ||| Sbjct 1539363 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 1539304 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || || || || |||| | | |||||| || || || | | ||| | || Sbjct 1539303 GGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAATGATGATATCCTG 1539244 Query 122610 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 ||| | | || ||| | | || | || | || ||| || |||||| || Sbjct 1539243 GATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 1539187 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 ||| ||||| || || || || || || || || ||||| ||||| |||||||| Sbjct 1539186 AGTGTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAG 1539127 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| |||||||| | ||| | |||| | ||| | || |||||||||||||| || Sbjct 1539126 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAAC 1539067 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCA 122845 | ||||| |||| || || | ||| |||||| ||| ||| | | | |||| | Sbjct 1539066 AGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCATCGGA 1539008 Query 122846 TTGCCCATTTCGCCTTCTT 122864 | ||||| | |||||||| Sbjct 1539007 TGGCCCAGTCAGCCTTCTT 1538989 >seq1 Length=5220104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || | || || ||||| ||||| ||| |||||| ||| | || || | Sbjct 1546168 ATGGACGCATCGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 1546227 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| ||||||| ||| | |||||||| || || Sbjct 1546228 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 1546287 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| |||| || ||||| || |||||||| || |||||| Sbjct 1546288 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 1546340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031662432800