Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq39 201 1e-46 seq3 161 1e-34 seq12 82.4 9e-11 >seq39 Length=4506647 Score = 201 bits (222), Expect = 1e-46 Identities = 1092/1722 (63%), Gaps = 49/1722 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1597407 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1597466 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | | ||||| || | || | ||||| || | |||| | || || | |||| Sbjct 1597467 CAAGTTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 1597525 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1597526 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1597585 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| |||||| |||| || ||| | || | ||||| Sbjct 1597586 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATG 1597645 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1597646 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1597705 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || ||||||||| |||||||| Sbjct 1597706 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGGAACTCACCA 1597765 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| || | | |||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct 1597766 GCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1597825 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 1597826 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1597885 Query 118284 T-TTTCCCTAATGCGTTCCTTG-AGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | || | | | | || | |||| ||||| || || | | | || | | Sbjct 1597886 TGTGTCTTGACTTCCT--CTCGAAGAGTCTCCCAATCCCAGAGGTCCGAGGGCTTGACGT 1597943 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| |||||||| |||||||| | || || || || |||| || || || | Sbjct 1597944 TCCACATGTCAAACTGCAGGATACCCTCAGATGCGGGGGAACCCTTGAAGGTGGAGTAGG 1598003 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| |||||||| || || | Sbjct 1598004 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCT 1598060 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517 |||| || | || | | |||||| || || || | | | ||| | | Sbjct 1598061 CAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAA-GGGCATACGCAGAGCA 1598119 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | ||| |||| || || ||||| ||||| || ||||| || || || | ||| ||| Sbjct 1598120 AGAAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 1598179 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 1598180 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 1598239 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-AC 118696 ||||||| ||| | || | ||| | | | || | || || |||||| | | Sbjct 1598240 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAG 1598293 Query 118697 ATACTTAGGAAGGGC-----GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 1598294 TTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCA 1598353 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||| |||||||| ||||| | ||| || || ||||| || | ||||||||| Sbjct 1598354 CAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG 1598413 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| || ||||||||||| |||||| |||| | || ||||| || ||| Sbjct 1598414 TTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGG 1598473 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCC 118928 | || |||||| || | ||| | | ||| | ||| ||| | | ||| Sbjct 1598474 GCCTCGAGAATGGCGTACCAAAGCTTTTGAGC---CTTGATGGTCTTGCGACCCTTGCCC 1598530 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || | |||||||||| ||| || || || ||||| || || | || | ||| || Sbjct 1598531 TCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCA 1598590 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || | || || | || | ||| | ||| || ||||| ||||||||||| Sbjct 1598591 GGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAA 1598650 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 1598651 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGG 1598710 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 1598711 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1598770 Query 119169 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | || | ||| | | ||| |||||| ||||||| |||||| ||| || Sbjct 1598771 AAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1598827 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 119280 ||||||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 1598828 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC- 1598886 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | || | | | ||| | | | ||||||||| || ||| ||| ||||| | Sbjct 1598887 -AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCATGG 1598945 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | || | ||||| | ||||||| || || || ||| |||| | | | | || Sbjct 1598946 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCCACCAAGA 1599005 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 |||| |||| ||| ||| || || || || |||||||| || || | || || Sbjct 1599006 AGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCG 1599065 Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 ||| | | |||| ||||| | ||| ||||||||||| Sbjct 1599066 TGA--AGAACTTGCTAGACATGAGATTGTATGTCTCCAAGAC 1599105 >seq3 Length=2226179 Score = 161 bits (178), Expect = 1e-34 Identities = 532/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 1539482 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 1539423 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | || | | | || || | |||| ||||||| Sbjct 1539422 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCT--CATTGCCAAGAGCGACAAGGAGAC 1539365 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | |||| |||||||||||| ||| || |||||||| |||| |||| || Sbjct 1539364 GATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCAC 1539305 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || || |||| ||| ||||||| || || || | ||| | | Sbjct 1539304 AGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAATGATGATATCCT 1539245 Query 129966 GAATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | || ||| | | | || | | ||| | || | || ||| || |||||| | Sbjct 1539244 GGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGT 1539188 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| ||||| |||||||| |||||||| || || ||||| |||||| ||||||| Sbjct 1539187 CAGTGTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGA 1539128 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||| | |||||| || | || | ||| |||||||| ||||| | Sbjct 1539127 GACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATACCCTCAA 1539068 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 130202 || || || |||| |||||||| ||||||||| | ||| | | ||| | Sbjct 1539067 CAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGA 1539008 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || || | ||||| || || | ||||| | Sbjct 1539007 TGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGG 1538948 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | | | || ||||||||||| | || ||||| || || || ||| ||| | Sbjct 1538947 TTCGCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAA 1538888 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | ||| | ||||||| | || || || ||||| ||||| Sbjct 1538887 TGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTC- 1538830 Query 130382 TCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | | ||| | | || ||||| || || ||||| || |||| || || || Sbjct 1538829 GCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGC 1538770 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTC-GTT--CAGGGTCTTCCAGTCGTCAAG 130497 ||||| | | || ||| |||| | ||| || | |||||||||| || Sbjct 1538769 AAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAG 1538710 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| | |||||| |||||||| Sbjct 1538709 ATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 1538677 >seq12 Length=5052385 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 3018628 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 3018569 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 3018568 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 3018509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434867591080