Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 seq4 104 3e-17 >seq3 Length=2226179 Score = 145 bits (160), Expect = 9e-30 Identities = 352/522 (67%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||||||||| ||| | |||||||| |||||| | |||| ||||| | | ||| | Sbjct 1538677 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACT 1538736 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | |||| || || | ||||||| || ||||| |||| || ||||| || Sbjct 1538737 GCTGATGAGCAGTTCTTTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATC 1538796 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| || | || || ||||| || |||| |||| || | | Sbjct 1538797 GTCAACGAGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCC-CTGAGGCTCGTTG 1538855 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | ||| ||||| ||| |||| Sbjct 1538856 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCA 1538914 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734 | |||| || || || || || || ||| | | ||||| | ||||| | || Sbjct 1538915 TCGACACATACATCAAAGAGCCCGCCCAGC-GAACCTATCTCTTCAACGCCATTGAGACC 1538973 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 94793 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 1538974 ATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 1539033 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||| |||| ||| | || ||||| |||||||||||||||||| |||| | Sbjct 1539034 T-CCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTTAGTGGTGC 1539092 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||| | |||| | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 1539093 CTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAA 1539152 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| |||||||||||||| || || ||| || ||||| Sbjct 1539153 CGAGCTCATCTCTCGTGACGAAGGTCTTCACACTGACTTTGC 1539194 >seq4 Length=1305649 Score = 104 bits (114), Expect = 3e-17 Identities = 227/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGG---TTGATTTTCGCGAGCGA 9752 ||| | |||||||| || || ||||| || ||| || || ||| |||| || || | Sbjct 1293586 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCC-GC-A 1293643 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | ||||| || || || |||||||| || ||||||||||| ||||| |||| | | Sbjct 1293644 GTG--AAGAGGTCACGGACTCGCTTGGCACCGACACCAACAAAGATCTCGTCAAA-CTCG 1293700 Query 9813 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 1293701 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 1293760 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 9931 |||||||| || || || ||| | |||||| |||| || | || || ||| Sbjct 1293761 GTCTTACCAGTGCCAGGAGGACCGACTAGGAGGACACCCTTGGGCAGTTTAGCACCAAGA 1293820 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCG 9991 | | | | || || | ||| ||||| || |||| ||||| | || |||||||| Sbjct 1293821 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 1293880 Query 9992 GCGTCAATCCCCTCAACATCGGTAAACCGGGT 10023 ||||| || | ||||||| | ||||| || Sbjct 1293881 TCGTCACAACCATGAACATCGTTGAACCGAGT 1293912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260486497320