Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq43 143 6e-29 seq40 143 6e-29 seq39 104 6e-17 >seq3 Length=2226179 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 467590 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 467531 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || |||||||| || ||||| |||||||| Sbjct 467530 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 467471 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 467470 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 467411 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 467410 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 467376 >seq43 Length=2346381 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 1477403 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1477344 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 1477343 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1477284 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 1477283 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1477225 >seq40 Length=4096408 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| || |||| ||||| |||| | ||| Sbjct 1051034 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1051093 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| ||||||||||| ||||| ||||| || || |||||||| Sbjct 1051094 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACC 1051153 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || ||||| || || | || || || | Sbjct 1051154 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 1051213 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || || | ||| | |||||| Sbjct 1051214 AGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1051255 >seq39 Length=4506647 Score = 104 bits (114), Expect = 6e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || ||||| |||| || | ||| || ||||||| ||||| || | || ||| Sbjct 1598408 TTTTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 1598467 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || |||||||| | |||||| | |||||| || | ||| | | |||| Sbjct 1598468 GTCTGGGCCTCGAGAATGGCGTACCAAAGCTTTTGAGCCTTGATGGTCTTGCGACCCTTG 1598527 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || ||| ||||||||||||||||||| |||| || || | ||||||| ||| |||| Sbjct 1598528 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 1598587 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || || || | || |||| || || | |||| || | ||||||| Sbjct 1598588 CCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATG 1598647 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || |||| |||||| ||| |||||| Sbjct 1598648 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAG 1598679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530542989842