Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39 208 1e-48 seq3 145 1e-29 >seq39 Length=4506647 Score = 208 bits (230), Expect = 1e-48 Identities = 453/673 (67%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 ||||| || || || |||||||||| || ||| ||||| | | | ||| || ||||| Sbjct 1598588 CCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATG 1598647 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || |||||||| ||||| || |||| || ||||| |||| | || || || || Sbjct 1598648 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCG 1598707 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||| ||||| ||||| || | | |||||| ||||| || || || || || Sbjct 1598708 TGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATG 1598767 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||| ||||| || || || ||||| || | ||| | |||||||| || | Sbjct 1598768 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1598827 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || | | ||| |||| || || || |||||||| || || || | || || ||| Sbjct 1598828 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCA 1598887 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||||||| | | ||| || || || || ||||| || ||||| | ||| Sbjct 1598888 GTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 1598947 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG-AAGAAA 76968 ||| || | || || ||||| ||||| ||||| || ||| |||| | | ||||| Sbjct 1598948 CAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCCACCAAGAAG 1599007 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 || | |||| ||| | ||| || || ||||| || | || || || ||||| || Sbjct 1599008 CAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGT 1599066 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGAT 77087 ||| | || ||| | ||||||||||| || | ||| || ||||| || Sbjct 1599067 GAAGAACTTGCTAGACATGAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCA 1599126 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || |||| |||||||| | ||| |||||||| || || ||| ||||| | | Sbjct 1599127 G-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAA 1599185 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | || | | ||||||| |||||||| || || ||||| || | |||| || || | Sbjct 1599186 TCTTAAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGC 1599245 Query 77208 TTTCGTAAATAAT 77220 || |||| ||| Sbjct 1599246 GGTCATAAACAAT 1599258 >seq3 Length=2226179 Score = 145 bits (160), Expect = 1e-29 Identities = 548/854 (64%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || | ||||| |||||||| || || || ||||| | | || || || Sbjct 1539488 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 1539429 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || || || || || || | || || | || | | || | | || Sbjct 1539428 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCATTGCCAAGAGCGACAAGG 1539369 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || ||||| || || ||| ||||| | ||| | ||||| || | ||| Sbjct 1539368 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1539309 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC-----GATA 46573 || ||||| || || || ||||| || ||||| ||||| ||||| |||| Sbjct 1539308 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAATGATGATA 1539249 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 | | ||| | ||| || ||| | || | | | || | | || | Sbjct 1539248 TCCTGGATCAT-CTGCTT----ACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAGG 1539194 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| ||| ||||| ||||| || | | || | ||||| || || || || |||| Sbjct 1539193 CAAAGTCAGTGTGAAGACCTTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAG 1539134 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| |||||||| || |||| ||||| | ||| |||||| || | Sbjct 1539133 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTAAAGAAGATAC 1539074 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 | || ||||| || || || || || | || | | || || |||| | |||| Sbjct 1539073 CCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCC 1539014 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | ||||| |||||||| || | || || || || || || || || |||| Sbjct 1539013 ATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGA 1538954 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 || || || | | ||||| | ||||| || || | || || | || | Sbjct 1538953 GATAGGTTCGCTGGGCGGGCTCTTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGG 1538894 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||||||||| || || ||||| || ||||| || || | || |||| ||||| | Sbjct 1538893 AATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGA 1538834 Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 |||| || ||||| || ||| | ||||| || || || |||||| ||||| || Sbjct 1538833 CCTCGCCACTGAATCGCTC-GACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAG 1538775 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCA 47106 || || | | || | ||| | | ||||| | ||| | | || |||||||| Sbjct 1538774 AAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCG 1538715 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 | || ||| || || | ||| | || ||||| |||||||| || ||||| || || || Sbjct 1538714 TGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTG 1538655 Query 47167 TACATATTCCATAT 47180 ||||| | ||| || Sbjct 1538654 TACATTTGCCAAAT 1538641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934016797760