Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20temperatum_20[genbank_20GCA_5F001513835.1_202016-01-13] 43 sequences; 45,458,781 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq40 152 1e-31 seq3 147 5e-30 seq43 140 8e-28 >seq40 Length=4096408 Score = 152 bits (168), Expect = 1e-31 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| ||||| || |||||||| ||||| ||| | ||| Sbjct 1051024 CAGATTTTCGTGAAGACACTCACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGTGAC 1050965 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || |||||||| || ||||| Sbjct 1050964 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAG 1050905 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||||| |||||||| | || |||| ||| || ||| | Sbjct 1050904 CGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGCAC-CTTGAGCGACTACAACAT 1050846 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| || || || ||| | |||| Sbjct 1050845 CCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 1050810 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||| ||||| || || || ||||||| Sbjct 1051473 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCG 1051414 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| || || |||||||| |||||||| || || | Sbjct 1051413 ACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 1051354 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || ||||| || || ||||| || | || |||||||| || ||| | ||||| | Sbjct 1051353 TCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGG 1051294 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || ||||| || Sbjct 1051293 AATCTACTCTTCATCTCGT 1051275 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 1051765 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 1051706 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 1051705 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAA 1051646 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || || | ||||| | ||||| ||| | Sbjct 1051645 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 1051586 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||||||| Sbjct 1051585 CAGAAGGAGTCCACTCTTCATCTTGTT 1051559 >seq3 Length=2226179 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 467382 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 467441 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 467442 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 467501 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 467502 CGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 467561 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 467562 CAGAAGGAGTCCACCCTCCACCTGGT 467587 >seq43 Length=2346381 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 1477224 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1477283 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 1477284 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACT 1477343 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 1477344 GATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1477403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730536819342