Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq531 136 8e-27 seq865 95.1 3e-14 seq2692 91.5 3e-13 >seq531 Length=18082 Score = 136 bits (150), Expect = 8e-27 Identities = 405/617 (66%), Gaps = 21/617 (3%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || || ||| ||| || |||||||| |||||||||||||| || || || Sbjct 10036 TTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTGATGGCAAGATTGTTGAGCGTCCC 9977 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC-ATAGAGAGCGTG-- 248949 ||||||||| | ||||| ||| ||||||| || | || |||| ||| ||||||| Sbjct 9976 CAGCACATGATCATGCGTGTGTCTGTCGGCAT---CTGGGGTGACGATATTGAGCGTGTC 9920 Query 248950 CTCGAGACGTAC-ACCGGA--ATGAGTGAACGCTGGATGACACATGCCACACCGACGCTC 249006 || ||||| ||| ||| || ||| || || | || |||||| | || || ||| Sbjct 9919 CTGGAGACCTACAACCTGATGTCGAGCAAATTCT---TCACCCATGCCTCCCCCACCCTC 9863 Query 249007 TTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGAC 249066 ||||| || ||||| | | ||||||| ||| ||||| || | | |||| |||| Sbjct 9862 TTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACATGAAAGAG 9803 Query 249067 GACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTC 249123 ||| | || || |||||||| || || | |||| || | ||| || || | Sbjct 9802 GACAGCATTGAGGGTATTTATGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATG 9746 Query 249124 GCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGT 249183 ||||| || ||||| || |||| | ||||| || | || || |||||| ||| Sbjct 9745 GCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCTCTTACATCGCTGGT 9686 Query 249184 ACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGG 249243 || || || | | ||| || ||| | ||||| ||| | ||| ||| || Sbjct 9685 ACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACTGCCCGG 9626 Query 249244 TTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGG 249300 | | || |||||| || | ||| || | || ||||| || | || ||| Sbjct 9625 TACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGG 9566 Query 249301 CACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGA 249360 ||||| ||| | || |||||||| ||| || |||||| ||||||| ||| | | Sbjct 9565 CACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGC 9506 Query 249361 GCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCC 249420 || || ||||| ||| | || ||| | |||| | |||||| || ||| || Sbjct 9505 GCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAG 9446 Query 249421 GACGGCGATTGGACGCT 249437 |||| || ||||| || Sbjct 9445 AACGGTGACTGGACCCT 9429 >seq865 Length=12502 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || || ||||||||| || | || || |||||||| ||| ||||||| || || ||| Sbjct 1365 TGCCCCCCTTTCAAGATCATCATTCTCGACGAGGCCGACTCCATGACACAAGATGCCCAG 1424 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||| || || |||| |||||||| || | | || || || ||| || | ||| Sbjct 1425 AGCGCACTGCGAAGAACAATGGAGACATACAGCAAGATCACTCGCTTCTGCTTGATCTGC 1484 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381 ||||| || | ||||||| |||||| ||| ||| ||| |||||||||||||| Sbjct 1485 AACTATGTCACCCGAATCATCGACCCGCTCGCTAGTCGATGCAGCAAGTTTCGATTCAAG 1544 Query 254382 ACCCTCG 254388 | ||||| Sbjct 1545 AGCCTCG 1551 >seq2692 Length=6754 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| || ||| | || || |||| ||||| || || ||||||||||| |||||||| || Sbjct 9 CCTCCCCCATCTCCTCCTCTACGGCCCTCCAGGCACCGGCAAGACGTCGACCATCCTCGC 68 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || ||||| | | | ||| | |||||| | || ||||||||||| ||||| Sbjct 69 CCTCGCCCGCCGCATCTATGGCACCGCAAACATGCGCCAGATGGTGCTCGAGCTCAACGC 128 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | ||||| || || || |||| ||||| || Sbjct 129 CTCGGACGACCGCGGCATCGACGTGGTGCGGGAGCAGATTAAGACGTT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073558756060224