Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq531 194 2e-44 seq1264 120 3e-22 seq2334 113 4e-20 seq3844 98.7 9e-16 >seq531 Length=18082 Score = 194 bits (214), Expect = 2e-44 Identities = 919/1441 (64%), Gaps = 37/1441 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | ||||| ||| || | ||| || ||| | || Sbjct 8562 TTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGC 8621 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||||||| || | || | || || ||||| || | | Sbjct 8622 TCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGC 8681 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | |||||||| ||||| | ||| || | |||| |||| Sbjct 8682 AGCAGACTG--TTGCGAATGCCGTGCTCCTTGACCTGCTCCCGGAGGTTCTCCCAGTCCC 8739 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| |||| | |||||||||| |||| | ||| ||||| |||||| Sbjct 8740 AGAGGTCAGAAGGCTTCACATTCCACATGTCGAACTGGAGAATACCCTCAGAGGCGGGAG 8799 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-TCGCCTCCAGA 145354 ||| | |||| ||| ||| ||||| |||| ||| | || || Sbjct 8800 AGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCT-GCACCGAAGCAGTGAGG 8858 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || | || || |||||| || ||| |||||||| || || |||| Sbjct 8859 GCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGAGACTCG 8918 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | ||||||||||| | |||||||| || || ||||| | || || || ||||| Sbjct 8919 AAAGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCAATGGGT 8978 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 || ||| ||||||||| | | || | | ||| || | || ||||||||| Sbjct 8979 CGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGTGGTTCACGTCGATAATC 9038 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 | |||| ||| || || || |||| ||| | || ||||||| | |||||| | | | Sbjct 9039 CTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGAAGTCATAGCAA 9098 Query 145595 GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654 || || || | | | | | ||| | || || | || || || || | Sbjct 9099 GCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAGCAAGGTTGCAGACAGCAACC 9158 Query 145655 TCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTT 145711 || || | | ||| ||| | | ||||||| ||| | ||| ||||| |||||| Sbjct 9159 TCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTAC---GGATGGTG 9215 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 ||||| || | ||| || || || | |||||| |||||||||||||||| | || | Sbjct 9216 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTG 9275 Query 145772 CCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 || ||||| ||||| ||| | ||| | | | | || | ||| || || || Sbjct 9276 CCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGC---TTCTGGGCCTTCA--TGG 9330 Query 145829 TGCTGGTAGC--GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | || | | |||| | | || || || ||| || |||| ||| | || | Sbjct 9331 TCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCAT 9390 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 |||| |||| ||| ||||| |||| |||||||||||| || | ||| | ||||| | Sbjct 9391 AGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCT 9450 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 ||| |||| ||| || | ||| || | ||| || || | || |||||| || | Sbjct 9451 CGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGA 9510 Query 146007 AATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCA 146064 ||||| || ||| | || || | ||| | ||| | ||| || |||||||| Sbjct 9511 CCTCCTCCTTGCCGTGGTTCTTGC-GCAGGTCAAGGA-ACTCAAAGACATCTGCGTGCCA 9568 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121 || |||| |||| ||| | ||| || ||| |||||||||||||| |||| || Sbjct 9569 GGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCG 9628 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 | ||||||| ||||| || | |||||| ||| ||| ||| ||||| ||| Sbjct 9629 GGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGGTACC 9688 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC-GCCGCCGT 146240 || | ||| || || | | || || |||| ||||| ||| ||||| | Sbjct 9689 AGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCGCCAT 9748 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTC 146300 |||||| || ||| ||| ||| || || || || || |||||||| || | Sbjct 9749 -CTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTCTT 9807 Query 146301 GAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACG 146360 ||| ||| ||| ||||| ||| ||| ||| | | || || || || ||| | | Sbjct 9808 TCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGG 9867 Query 146361 TCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCG---ATACGTTTCGATAGCGT 146417 | ||| || || || || | ||| |||| |||| | || || || | | Sbjct 9868 TGGGGGAGGCATGGGTGAAGAATTT---GCTCGACATCAGGTTGTAGGTCTCCAGGACAC 9924 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | ||| ||||| || ||||| | || || ||||||| |||||| ||||| |||| Sbjct 9925 GCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCATGTGCTGGGGACGCT 9984 Query 146478 C 146478 | Sbjct 9985 C 9985 >seq1264 Length=10365 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | |||||||||||| || |||||||||||| Sbjct 4490 GCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 4549 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 4550 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGGGG 4609 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | ||||| | |||||||| Sbjct 4610 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGAC 4669 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 |||| ||||| ||| || || || Sbjct 4670 CTCGAGGGTAATGGTCTTGCCCGT 4693 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || | || | ||||||||||| || |||||||| ||||| Sbjct 3988 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4047 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | ||||| || || ||||| Sbjct 4048 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4107 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| || | | || | || |||| || || | Sbjct 4108 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 4167 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 4168 TCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4214 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | |||||||||||| || |||||||| ||| | Sbjct 3760 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3819 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || |||||||| || || |||| | ||||||||||| || ||| Sbjct 3820 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 3879 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | |||||| | ||||| | Sbjct 3880 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCCACC 3939 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || || || |||||||| Sbjct 3940 TCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3986 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| ||| | |||||| ||||| ||||||||||| Sbjct 4246 GTTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 4305 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||||||||||| ||||| || || || || || ||| ||| |||| Sbjct 4306 GCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTG 4365 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | |||| ||| | || ||||| || || || Sbjct 4366 ACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTC 4425 Query 131218 TTTACGA 131224 || |||| Sbjct 4426 TTGACGA 4432 >seq2334 Length=6172 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | ||| |||||| || |||||||| |||||| Sbjct 918 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 859 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 858 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 799 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 798 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 739 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || || || |||||||| Sbjct 738 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 692 >seq3844 Length=3219 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | ||| || ||||| ||||||||||| ||| ||| Sbjct 349 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 290 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| ||||| || || ||||| ||| || ||||| | | Sbjct 289 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 230 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| |||| ||| | ||| || || || || || || |||| Sbjct 229 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 170 Query 131225 AA 131226 || Sbjct 169 AA 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471923748885120