Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3859 145 2e-29 seq951 134 3e-26 seq2090 129 1e-24 >seq3859 Length=2726 Score = 145 bits (160), Expect = 2e-29 Identities = 429/657 (65%), Gaps = 7/657 (1%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||||||||||||||||||||| || | || ||||| || | |||||| |||| Sbjct 1396 TGTCTGGTGGTTGGAAGATGAAGCTGGCTCTAGCCCGAGCCATGCTTCAGCGTGCTGATG 1337 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || || || || || |||||||| | || ||||| | || ||||| | | Sbjct 1336 TCCTTCTCCTGGACGAACCTACCAACCATCTTGATGTTGCCAACATTGCGTGGCTCGAGA 1277 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||||| | | || || | | || ||||| ||||||||||||||||||| Sbjct 1276 ACTACCTCAAGACTCATCCCGATATCACCAGTCTGATTGTTTCTCACGACTCTGGCTTCC 1217 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACA 279945 | || ||| | | | |||| ||||| |||| || |||||| | ||| Sbjct 1216 TCGACAACGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTGGCTTGCTACA 1157 Query 279946 TCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGA 280005 ||||||||| | || || || | | ||||| ||||| |||||| ||| Sbjct 1156 AGGGCAACCTGGCCGCCTTTGTCGAGATCCGCCCCGAGGCCAAGAGCTACTACACTCTGT 1097 Query 280006 AGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAA 280065 || | ||| || | ||| | |||||| || || | ||| ||| ||| || | Sbjct 1096 CGGCCTCCAACGTCCAGTTCAAGTTCCCTCCCCCCGGTATCCTGACTGGCGTCAAGTCCA 1037 Query 280066 AGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA 280123 | || || ||||| | | ||| | |||| | | || ||||| | ||||| Sbjct 1036 TGACCCGTGCCATCATCCGCATGTCCAACGTGTCT--TACACGTACCCCAAGGCTCCCAA 979 Query 280124 -CATCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGG 280180 | | || ||| ||| | ||| | | || || || ||| ||||||| Sbjct 978 GCCTTCTCTGCATGAGGTCTCTTGCCAGCTGACACTGTCGTCCCGTGTTGCCATCATTGG 919 Query 280181 ACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCAC 280240 ||||| || || || ||||||||||| ||||| | || || ||||||||| | || Sbjct 918 CCCCAACGGAGCTGGCAAGTCTACCCTGATCAAGTTGCTCACCGGCGAGACCATTCCTAC 859 Query 280241 TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTT 280300 | || || |||||| |||||| |||| || | ||| || ||||||||| | Sbjct 858 TACCGGAAAGGTCGAGAAGCACCCCAACTTGCGTATCGGCTACATCAAGCAGCACGCTCT 799 Query 280301 CCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 | ||| |||||| || || || | ||| || ||||| ||| |||||||||| || Sbjct 798 GGAGCACGTCGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTTCAGTGGCGTTA 742 >seq951 Length=13420 Score = 134 bits (148), Expect = 3e-26 Identities = 385/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 6634 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 6575 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| || |||||| || || ||||| | Sbjct 6574 GCCTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATG 6515 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | ||||||||| | || || || | ||||| | | Sbjct 6514 TACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGG 6455 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| | ||||| | | | | Sbjct 6454 AACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCA 6395 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| |||| | ||| ||||||||||| Sbjct 6394 CGGC----CCTTGAGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTC 6339 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | |||||||||||| | ||||| ||| ||||||| Sbjct 6338 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 6279 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | ||||||||| | | || || || Sbjct 6278 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAAGCGACGAG 6219 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| |||||| || ||||||||| || | | || ||||| | ||||| Sbjct 6218 ACGCTGAGCAAAGGACGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAGTCGGCCTT 6162 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| | | |||||| || || || || | ||||| || | || | ||| || Sbjct 6161 CTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGTTGAGCAGGCTC 6102 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| ||||| ||||| |||| || |||||| Sbjct 6101 CTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATG 6056 >seq2090 Length=6459 Score = 129 bits (142), Expect = 1e-24 Identities = 708/1102 (64%), Gaps = 54/1102 (5%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| |||||| | Sbjct 3843 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACTTTCTCTC 3902 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| ||||||||||| ||| || | |||| | ||||||||||| | | Sbjct 3903 TTGCCTACGGTGCCAAGATTCTGCTCAACCAGACTCACCTCCGCCTCAAGCGTGGCCAGC 3962 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||| ||||| | Sbjct 3963 GCTACGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACTCTCATGCGTGCCATCAACA 4022 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | | ||| ||||| | ||| ||||| | ||| || | || |||||| Sbjct 4023 ACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 4081 Query 279555 GACATCGACTC--CTCTCTCTCGGAT-AGCAC--TGTGTTCGAC--TTCCTAACGTCTGA 279607 ||| | ||||| || | || ||| | ||| | | ||| | || || Sbjct 4082 GACCTGGACTCTGCTGACACTGAGATGACCACCATTGACTGGACCATGAAGAAGCTCGCC 4141 Query 279608 CAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGG 279667 | | ||| | | || ||| | ||||| || || || | || | | | || Sbjct 4142 GAGGCCGGT----GTCACCAACTCCCAGGAGGATGTCGTCAAGCAGCTCAACGACTTCGG 4197 Query 279668 TTTTGATGAAAGAATGCGTAATCT-GCCAG-TAGGTTCTCTGTCGGGTGGTTGGAAGATG 279725 || || ||| || ||| || || | | | || || ||||||||||||||| Sbjct 4198 CTTCACCGAGCAGATG-GT-TTCTGGCGAGATCACTGCCCTCTCCGGTGGTTGGAAGATG 4255 Query 279726 AAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCA 279785 ||||| || || || ||| | | | | ||||| | || ||||| || ||||| Sbjct 4256 AAGCTCGCTCTGTGCCGTGCCGTCTTCGAGGCTCCCGATATTCTGCTGCTAGACGAGCCT 4315 Query 279786 ACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACC-AGTCTGAA 279844 |||||||| |||| | ||||| ||||| | | ||||| ||| | ||| Sbjct 4316 ACCAACCATCTGGATGTGAAGAACGTCAAATGGCTCGAGGAGTACCTCACCAACTCT--- 4372 Query 279845 GAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGC 279904 | | ||| |||| ||||| ||||||||||||||||| || ||| ||| | || Sbjct 4373 -CCTTGCACCTCCATCATCGTCTCCCACGACTCTGGCTTCCTCGACAACGTCTGC-CAGC 4430 Query 279905 -CATCATTCACTATGAGC---AAAATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTG 279960 ||| | ||||| |||| || || |||| || |||| || |||||| ||| Sbjct 4431 ACATTGTCCACTACGAGCGCTTCAAGCTCAAGCGCTACAAG------GGTAACCTGGCTG 4484 Query 279961 CTTTCGTGGCAAAGCG--CCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCG- 280017 ||||||| || ||| |||| | | | | ||||| || || | ||| ||| Sbjct 4485 CTTTCGT-CCAGCGCGTCCCCTCTGCCCG-ATCTTACTACGAGCT---CGGTGCCTCCGA 4539 Query 280018 --CCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGC 280075 | ||| ||||||||||| || || || ||||| ||| | |||| || Sbjct 4540 GATCGAGTTCTCCTTCCCTGAGCCCGGTTTCCTCGAGGGAGTCAAGACCAAGGCCAAGGC 4599 Query 280076 AATCATG-AAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAACATCTTCAG-- 280132 ||| || || | | | ||||| || ||| | | ||| | | |||| Sbjct 4600 CATCCTGCGTGCCACCAAG-ATGTCCTTCCAGTACCCCGGTACCTCCA--AGCCTCAGAT 4656 Query 280133 CAGTGTCAACTC---GCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGG 280189 || | || ||| ||| || || ||| || |||| ||||| || ||||| || Sbjct 4657 CACCGACATCTCCTTCCAGTGCTCCCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGG 4716 Query 280190 TGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTC 280249 ||| || ||||| ||||| ||||| ||||| ||||| ||| | |||| ||||| Sbjct 4717 TGCCGGAAAGTCCACCCTCATCAACGTCCTCACTGGTGAGCTCATCCCCACCGAGGGTGA 4776 Query 280250 CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACAT 280309 | | |||| ||||| || || || ||| || |||||||||||| ||||| Sbjct 4777 GATCTACCAGCACGAGAACATCCGTATCGCCTACATCAAGCAGCACGCTTTCGCTCACAT 4836 Query 280310 CGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGC 280368 ||| ||||||||||||| ||| || | | ||||| |||||||| | | || | ||| Sbjct 4837 CGATAACCACCTGGACAAGACCCCCTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTG 4895 Query 280369 AGGATCTGGAGTCGGTGGATCG 280390 |||||| ||| | |||| || Sbjct 4896 AGGATCGTGAGACCATGGACCG 4917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027638037883213