Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20tucumaniae_20[genbank_20GCA_5F001680535.1_202016-07-06] 15,093 sequences; 48,383,620 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq951 131 2e-25 >seq951 Length=13420 Score = 131 bits (144), Expect = 2e-25 Identities = 528/820 (64%), Gaps = 29/820 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 6653 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 6594 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| || | |||| Sbjct 6593 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCGAGGGCGACGAGG 6539 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || || || | |||| |||| ||||||| ||| || | |||||| |||| ||| Sbjct 6538 AGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGG 6479 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || ||||| || || | |||| ||| ||||||| || || || | |||| Sbjct 6478 GCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATG 6419 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | || | | ||| | | | || ||| || ||| Sbjct 6418 TCCTGGATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAT-GCA 6362 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || || ||| ||| || ||| Sbjct 6361 AAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGC 6302 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || | ||| | || ||||||||| ||| Sbjct 6301 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCC 6242 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCA 127701 || || || || || | ||||||| |||||||| || | |||| | | ||| Sbjct 6241 TCGACGGCAGCAAAAGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCA 6183 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || ||||| | ||||| || ||| || |||| ||||| || || | ||||| Sbjct 6182 TCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAG 6123 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | || | || || |||||||| | || ||||| || || || ||| Sbjct 6122 GTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGA 6063 Query 127822 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 127880 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 6062 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGA 6004 Query 127881 CCTCATCGGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAA 127937 |||| | || ||| | | || | ||||| || || || || || |||| | Sbjct 6003 CCTC-GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGATGCAGCGA 5947 Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 127994 | || || ||||| | | ||| ||| || | | ||| || | ||||||| Sbjct 5946 AGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGT 5887 Query 127995 CGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| ||||||||| || | ||| | |||||| |||||||| Sbjct 5886 CGTGGAGATCCTTGGATAAATCAATCTCCTCGGCAGTCCA 5847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613391454197880